AlignACE 3.0 10/20/99
AlignACE2 -i HI/HI_operons083_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944240081
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	HI1654_HI1655	71	HI1654: conserved hypothetical protein, HI1655: antigen
#1	HI1658	56	hemolysin, putative

Motif 1
        CTTTGCTCCATCATAAACAGACAATAGTCGTAGC	0	2	1
TTTTGTTTGCTTTTAAGTTATGAGATAAGTAAGATCTGCTAC	0	39	0
CTTACTTATCTCATAACTTAAAAGCAAACAAAA         	0	48	1
ATTAAATTACTATTAGTTTGAAAGTGATTTATTTTCCTG   	1	7	0
AATAAATCACTTTCAAACTAATAGTAATTTAATCTAAAAAGG	1	16	1
ACTAATAGTAATTTAATCTAAAAAGGAGTTAATT        	1	32	1
          *  **   * * **  *   **
MAP Score: 4.44723