AlignACE 3.0 10/20/99
AlignACE2 -i HP/HP_operons046_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247317
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	HP0414	37	IS200 insertion sequence from SARA17
#1	HP0437	69	IS605 transposase (tnpA)
#2	HP0988	69	IS605 transposase (tnpA)
#3	HP0998	69	IS605 transposase (tnpA)
#4	HP1096	69	IS605 transposase (tnpA)

Motif 1
TAATAATAAAAGATAAAGATAAGGAGTTATTT       	1	3	0
TTATAAAAACATTGTATAATAATAAAAGATAAAGATAAG	1	19	0
TTTATCTTTTATTATTATACAATGTTTTTATAAATAATG	1	25	1
TATACAATGTTTTTATAAATAATGAATAAGGATAGAGGA	1	40	1
TAATAATAAAAGATAAAGATAAGGAGTTATTT       	2	3	0
TTATAAAAACATTGTATAATAATAAAAGATAAAGATAAG	2	19	0
TTTATCTTTTATTATTATACAATGTTTTTATAAATAATG	2	25	1
TATACAATGTTTTTATAAATAATGAATAAGGATAGAGGA	2	40	1
TAATAATAAAAGATAAAGATAAGGAGTTATTT       	3	3	0
TTATAAAAACATTGTATAATAATAAAAGATAAAGATAAG	3	19	0
TTTATCTTTTATTATTATACAATGTTTTTATAAATAATG	3	25	1
TATACAATGTTTTTATAAATAATGAATAAGGATAGAGGA	3	40	1
TAATAATAAAAGATAAAGATAAGGAGTTATTT       	4	3	0
TTATAAAAACATTGTATAATAATAAAAGATAAAGATAAG	4	19	0
TTTATCTTTTATTATTATACAATGTTTTTATAAATAATG	4	25	1
TATACAATGTTTTTATAAATAATGAATAAGGATAGAGGA	4	40	1
          **      ******  * *
MAP Score: 41.0419

Motif 2
AAAGATAAAGATAAGGAGTTATTT          	1	0	0
ACATTGTATAATAATAAAAGATAAAGATAAGGAG	1	16	0
TTATTATTATACAATGTTTTTATAAATAATGAAT	1	33	1
GTTTTTATAAATAATGAATAAGGATAGAGGA   	1	48	1
AAAGATAAAGATAAGGAGTTATTT          	2	0	0
ACATTGTATAATAATAAAAGATAAAGATAAGGAG	2	16	0
TTATTATTATACAATGTTTTTATAAATAATGAAT	2	33	1
GTTTTTATAAATAATGAATAAGGATAGAGGA   	2	48	1
AAAGATAAAGATAAGGAGTTATTT          	3	0	0
ACATTGTATAATAATAAAAGATAAAGATAAGGAG	3	16	0
ATTTATAAAAACATTGTATAATAATAAAAGATAA	3	26	0
GTTTTTATAAATAATGAATAAGGATAGAGGA   	3	48	1
AAAGATAAAGATAAGGAGTTATTT          	4	0	0
ACATTGTATAATAATAAAAGATAAAGATAAGGAG	4	16	0
TTATTATTATACAATGTTTTTATAAATAATGAAT	4	33	1
GTTTTTATAAATAATGAATAAGGATAGAGGA   	4	48	1
          ******* * *  *
MAP Score: 39.2942

Motif 3
ATAATAAAAGATAAAGATAAGGAGTTATTT       	1	3	0
TTCATTATTTATAAAAACATTGTATAATAATAAAAGA	1	29	0
ATAATAAAAGATAAAGATAAGGAGTTATTT       	2	3	0
TTCATTATTTATAAAAACATTGTATAATAATAAAAGA	2	29	0
ATAATAAAAGATAAAGATAAGGAGTTATTT       	3	3	0
TTCATTATTTATAAAAACATTGTATAATAATAAAAGA	3	29	0
ATAATAAAAGATAAAGATAAGGAGTTATTT       	4	3	0
TTCATTATTTATAAAAACATTGTATAATAATAAAAGA	4	29	0
          ***** * *  *  * *
MAP Score: 36.981

Motif 4
TGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	1	8	0
TCCTTATTCATTATTTATAAAAACATTGTATAATAATA	1	34	0
TGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	2	8	0
TCCTTATTCATTATTTATAAAAACATTGTATAATAATA	2	34	0
TGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	3	8	0
TCCTTATTCATTATTTATAAAAACATTGTATAATAATA	3	34	0
TGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	4	8	0
TCCTTATTCATTATTTATAAAAACATTGTATAATAATA	4	34	0
          * *   ***** * *  *
MAP Score: 36.4683

Motif 5
CATTGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	1	8	0
CTATCCTTATTCATTATTTATAAAAACATTGTATAATAATA	1	34	0
CATTGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	2	8	0
CTATCCTTATTCATTATTTATAAAAACATTGTATAATAATA	2	34	0
CATTGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	3	8	0
CTATCCTTATTCATTATTTATAAAAACATTGTATAATAATA	3	34	0
CATTGTATAATAATAAAAGATAAAGATAAGGAGTTATTT  	4	8	0
CTATCCTTATTCATTATTTATAAAAACATTGTATAATAATA	4	34	0
          *  *     ***** * *  *
MAP Score: 35.2654