AlignACE 3.0 10/20/99
AlignACE2 -i HP/HP_operons055_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247551
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	HP0631	159	quinone-reactive Ni/Fe hydrogenase, small subunit (hydA)

Motif 1
ATGCCACCCTATTTTATTAGAAAAGGAACAAA     	0	5	0
ATCCAAATGAAACTTAATATTAAAGAAATTCCCTCAA	0	45	1
AATTCCCTCAATCTCAATAAAAACTAAAAAACAATCA	0	71	1
TCTCAATAAAAACTAAAAAACAATCAATTGCAGCTGT	0	82	1
TCATTATCTTAACATAATAAAAATAATACAGCTGCAA	0	109	0
          * *  ****  **  **
MAP Score: 2.11043