AlignACE 3.0 10/20/99 AlignACE2 -i HY/HY_operons018_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944252622 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 hsdM_1 300 TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) #1 jhp0742 48 putative #2 hsdR_2 300 TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) #3 hsdM_2 178 TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) #4 hsdM_3_hsdR_3 70 hsdM_3: TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT), hsdR_3: TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) Motif 1 TTAATTCTACTTTTATGGCAGTTTTTAGGGTAT 0 166 0 TAATGAAACCTTTAAGGGGCGTGCTAAAACCGC 3 112 1 GCGCAGCTAGAAAGGGAGTTTATCGCGCTT 2 7 1 ATTGGCGGTTTTGTTTGGCGGTTTTAGCACGCC 3 129 0 GAGTGTCCCATTCTTTGGGCGTGAAACAATGAT 2 128 0 TTTTTGTGTTTTGATTGGCGGTTTTGTTTGGCG 3 142 0 AAAAGACATTTTTAAAAGGGGTTTGA 3 3 0 AAGAAAACATTTCTAAGGGAATTTTCACGCTTT 0 67 1 TTGCGCTAGAATGTAAGGCTGTTTAACA 1 5 0 GTAAAAAGCGTTCTTAAGGGGTTTATG 4 4 0 CCTAAAAACAAAATAGGGCGGTTAAAA 4 53 1 TCTAAATCTTTTAAGGAGGGGTTTTTGTTGAAA 0 206 0 AAAGACAATTTAAAAGAGCAGTTAGAAAAGCTT 2 91 1 GTGAGTTCGTTAAAAAGGGTTTGAGCGATAAAT 0 251 0 TTGATGGTGGTTTTGCGTGAGTTCGTTAAAAAG 0 267 0 GGCGTTTCTATGGATATTTTTCTTATCA 2 282 0 ** ** *** *** MAP Score: 17.347 Motif 2 TAAAGCGGTAAAAAGCGTTCTTAAGGGGTTTATG 4 7 0 ATTTATCGCTCAAACCCTTTTTAACGAACTCACGCAA 0 251 1 CGAACTCACGCAAAACCACCATCAAGGAAATTTGA 0 275 1 CAAAAACATTAAAATCATTGATAAGAAAAATATCCAT 2 264 1 GCTTTCAACAAAAACCCCTCCTTAAAAGATTTAGAAA 0 204 1 ACCGCCAAACAAAACCGCCAATCAAAACACAAAAAAG 3 140 1 AAGATACCCTAAAAACTGCCATAAAAGTAGAATTAAG 0 163 1 TCAAACCCCTTTTAAAAATGTCTTTTAA 3 1 1 CATCGCTAATAAAAACGAAGATTACAAGGCTAAAACA 2 174 1 TCTCATGGAAGAAAACATTTCTAAGGGAATTTTCACG 0 59 1 AAGCGCGCTCAAAAAAGCTATTGATGAGCGTATTTTT 0 101 1 TGAATTTAAAAAAATCCACAACGAAAAAGAATTAAAA 2 57 1 TAAGCGTCAAGAAATCTTAAACGAAGAAGATACCCTA 0 137 1 AAAAAGAATTAAAAGACAATTTAAAAGAGCAGTTAGA 2 80 1 CGCGCTTTTACAAAAACAAGGCTATGAATTTAAAAAA 2 33 1 CCCACAAATACAGAGCAAACGCAAGGGATAAAAAAAT 3 61 1 **** * * * * ** MAP Score: 15.856 Motif 3 AAAACATTTCTAAGGGAATTTTCACGCTTTT 0 70 1 AACCCCTCCTTAAAAGATTTAGAAAAAGAAA 0 216 1 GAGTTCGTTAAAAAGGGTTTGAGCGATAAAT 0 251 0 GCGCAGCTAGAAAGGGAGTTTATCGCGCTTT 2 10 1 ATCCACAACGAAAAAGAATTAAAAGACAATT 2 70 1 AAAAGAATTAAAAGACAATTTAAAAGAGCAG 2 81 1 GACATTTTTAAAAGGGGTTTGA 3 1 0 CCCATTTTTAAAAGACATTTTTAAAAGGGGT 3 14 0 TGTCTTTTAAAAATGGGATTATAGCTTATTT 3 28 1 ATGAAACCTTTAAGGGGCGTGCTAAAACCGC 3 114 1 AAAACACAAAAAAGGGGCTTATCTC 3 163 1 AAAGCGTTCTTAAGGGGTTTATG 4 2 0 AAAAACAAAATAGGGCGGTTAAAA 4 56 1 ******* *** MAP Score: 12.1432 Motif 4 GGACGCTTTCAACAAAAACCCCTCCTTAAAAGATTTAGAAA 0 200 1 ATAATCCTAAAAACAAAATAGGGCGGTTAAAA 4 48 1 AAATCATTGATAAGAAAAATATCCATAGAAACGCC 2 275 1 AGAAATCTTAAACGAAGAAGATACCCTAAAAACTGCCATAA 0 146 1 TACAAGGCTAAAACAAGAAAGATCCAAGAAGATCCGATTTT 2 196 1 TAAAACCGCCAAACAAAACCGCCAATCAAAACACAAAAAAG 3 136 1 ATTCATCGCTAATAAAAACGAAGATTACAAGGCTAAAACAA 2 171 1 AACGAAAAAGAATTAAAAGACAATTTAAAAGAGCAGTTAGA 2 76 1 GGCTATGAATTTAAAAAAATCCACAACGAAAAAGAATTAAA 2 52 1 TTAGAAAAAGAAACAGAATTTATCGCTCAAACCCTTTTTAA 0 234 1 ATCGCGCTTTTACAAAAACAAGGCTATGAATTTAAAAAAAT 2 31 1 TCAAACCCCTTTTAAAAATGTCTTTTAAAAATGGGATTATA 3 10 1 CAATCGTCTCATGGAAGAAAACATTTCTAAGGGAATTTTCA 0 53 1 GTTTTTAGGATTATAATATAAAGCGGTAAAAAGCGTTCTTA 4 21 0 ** **** * *** MAP Score: 9.14137 Motif 5 CTCATGGAAGAAAACATTTCTAAGGGAATTTTCACG 0 60 1 TAAGGGAATTTTCACGCTTTTAAGCGCGCTCAAAAA 0 80 1 ACGCTCATCAATAGCTTTTTTGAGCGCGCTTAAAAG 0 96 0 GCTATTGATGAGCGTATTTTTAAGCGTCAAGAAATC 0 117 1 TTCTACTTTTATGGCAGTTTTTAGGGTATCTTCTTC 0 159 0 AACTGCCATAAAAGTAGAATTAAGGGACGCTTTCAA 0 176 1 TTAAGGAGGGGTTTTTGTTGAAAGCGTCCCTTAATT 0 193 0 TCTTTTTCTAAATCTTTTAAGGAGGGGTTTTTGTTG 0 209 0 GTTTTGCGTGAGTTCGTTAAAAAGGGTTTGAGCGAT 0 255 0 ACAATTTAAAAGAGCAGTTAGAAAAGCTTAACGATC 2 95 1 TTTTCAATTCATCGCTAATAAAAACGAAGATTACAA 2 165 1 GTTTTTGGTTTTCCCGTTCTCAAGCGCGAGATTAAA 2 235 0 TGATAAGAAAAATATCCATAGAAACGCC 2 282 1 CCATTTTTAAAAGACATTTTTAAAAGGGGTTTGA 3 8 0 CCACAAATACAGAGCAAACGCAAGGGATAAAAAAAT 3 62 1 TGCTATAATGAAACCTTTAAGGGGCGTGCTAAAACC 3 107 1 ACCGCCAATCAAAACACAAAAAAGGGGCTTATCTC 3 153 1 CATAAACCCCTTAAGAACGCTTTTTACCG 4 3 1 TGTTTTTAGGATTATAATATAAAGCGGTAAAAAGCG 4 27 0 TATAATCCTAAAAACAAAATAGGGCGGTTAAAA 4 47 1 ** * ** ***** MAP Score: 9.0094 Motif 6 AAGCGTCAAGAAATCTTAAACGAAGAAGATACCCTAAA 0 138 1 GAATTAAGGGACGCTTTCAACAAAAACCCCTCCTTAAA 0 192 1 TCCTTAAAAGATTTAGAAAAAGAAACAGAATTTATCGC 0 222 1 GAATTTAAAAAAATCCACAACGAAAAAGAATTAAAAGA 2 58 1 TTATTAGCGATGAATTGAAAATAAAGAGTGTCCCATTC 2 148 0 CGAAGATTACAAGGCTAAAACAAGAAAGATCCAAGAAG 2 189 1 CGCGCTTGAGAACGGGAAAACCAAAAACATTAAAATCA 2 243 1 CCCCACAAATACAGAGCAAACGCAAGGGATAAAAAAAT 3 60 1 GGCGTGCTAAAACCGCCAAACAAAACCGCCAATCAAAA 3 129 1 CAAAACCGCCAATCAAAACACAAAAAAGGGGCTTATCT 3 149 1 TTATATTATAATCCTAAAAACAAAATAGGGCGGTTAAA 4 41 1 * **** *** ** MAP Score: 8.4634 Motif 7 AGAAAGGGAGTTTATCGCGCTTTTACAAAAACAA 2 18 1 TTCTAAGGGAATTTTCACGCTTTTAAGCGCGCTC 0 77 1 TCAAATTTCCTTGATGGTGGTTTTGCGTGAGTTC 0 276 0 AATGATTTTAATGTTTTTGGTTTTCCCGTTCTCA 2 249 0 CATAAACCCCTTAAGAACGCTTTTTACCGCTTTA 4 10 1 TAATTCTACTTTTATGGCAGTTTTTAGGGTATCT 0 164 0 TGAAACAATGATCGTTAAGCTTTTCTAACTGCTC 2 106 0 TTGGCGGTTTTGTTTGGCGGTTTTAGCACGCCCC 3 127 0 ATCTTCTTGGATCTTTCTTGTTTTAGCCTTGTAA 2 195 0 TGAGCGATAAATTCTGTTTCTTTTTCTAAATCTT 0 229 0 TTAATTCTTTTTCGTTGTGGATTTTTTTAAATTC 2 58 0 TAAATAAGCTATAATCCCATTTTTAAAAGACATT 3 26 0 AAAGCTATTGATGAGCGTATTTTTAAGCGTCAAG 0 114 1 ** * ******* MAP Score: 7.68633 Motif 8 GATCGAGCTTATGTGATCACGCATAAGCGACTTCACAATCG 0 18 1 AGCGTCAAGAAATCTTAAACGAAGAAGATACCCTAAAAACT 0 139 1 GAATTAAGGGACGCTTTCAACAAAAACCCCTCCTTAAAAGA 0 192 1 ACCCTTTTTAACGAACTCACGCAAAACCACCATCAAGGAAA 0 264 1 GAATTTAAAAAAATCCACAACGAAAAAGAATTAAAAGACAA 2 58 1 TTAAAAGAGCAGTTAGAAAAGCTTAACGATCATTGTTTCAC 2 100 1 CTTAACGATCATTGTTTCACGCCCAAAGAATGGGACACTCT 2 121 1 CGAAGATTACAAGGCTAAAACAAGAAAGATCCAAGAAGATC 2 189 1 CGCGCTTGAGAACGGGAAAACCAAAAACATTAAAATCATTG 2 243 1 AGCAAACGCAAGGGATAAAAAAATAATATTCTTTGCTATAA 3 74 1 ATTCTTTGCTATAATGAAACCTTTAAGGGGCGTGCTAAAAC 3 101 1 GGGCGTGCTAAAACCGCCAAACAAAACCGCCAATCAAAACA 3 128 1 AAAACCGCCAATCAAAACACAAAAAAGGGGCTTATCTC 3 150 1 TTATATTATAATCCTAAAAACAAAATAGGGCGGTTAAAA 4 41 1 * **** * ** * * MAP Score: 6.90382