AlignACE 3.0 10/20/99
AlignACE2 -i HY/HY_operons052_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234041
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	hyaA	157	Hydrogenase, small subunit

Motif 1
      TTTGTTCCTTTTTTAATAAAATAGGGGGTAT	0	4	1
AACATTAAGTTTCATTTGGATAGAATACCCCCTATTT	0	28	0
ATGAAAGGAATTTCTTTAACATTAAGTTTCATTTGGA	0	45	0
GTTAAAGAAATTCCTTTCATCTAAATAAAAGCTAAAA	0	62	1
CACTACATTATTTTTATTATGTTAAGATAATGAAAAT	0	111	1
          *** ***    * ** *
MAP Score: 2.51105