AlignACE 3.0 10/20/99
AlignACE2 -i MG/MG_operons008_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944238254
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MG272	249	dihydrolipoamide acetyltransferase (pdhC)
#1	MG274	27	pyruvate dehydrogenase component E1, subunit alpha (pdhA)
#2	MG275	82	NADH oxidase (nox)
#3	MG277_MG278	42	MG277: conserved hypothetical protein, MG278: guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase (spoT)

Motif 1
    CACTTTTTTAAAATATAGTTACCTAGCT	0	6	1
GGTACCTAGCTCTAAAAAATAAAGCTAGGTAA	0	28	0
CAACAGCTGCTGTAAAAAGTAAGACAAAATTT	0	130	1
AAAATTTTTGTCTAACAACTAAAAAGCCAGTA	0	155	1
AGTAGTGATCTATAACAAATAAAAAAAGCCAG	0	193	0
AGATCACTACTATTAAATTTAAACTTTAAGTA	0	214	1
TTCTATGCTAATTTAAAACTAAG         	1	1	0
TGATTCGATCTTTTAAAATTAAGCTTTTG   	2	7	0
CTTAAATAGCTTAAAAAATTACTGCAGCTAAG	2	56	1
TTAATATTTATATAAAATTTAAGTTATTAAAA	3	13	1
AAATTTAAGTTATTAAAAATAGTTA       	3	27	1
          * ****** ***
MAP Score: 22.848