AlignACE 3.0 10/20/99
AlignACE2 -i MG/MG_operons025_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944238567
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MG109	59	serine/threonine protein kinase, putative
#1	MG115	24	conserved hypothetical protein
#2	MG127	35	conserved hypothetical protein
#3	MG339	300	recA protein (recA)

Motif 1
GTAGACTTGAACAAAAATCTATATATTTACTA	3	102	1
AATTTCTAATAAAAAAATGTCATTTTTATTTT	3	248	1
AATTTTTCTTAAAAAAATCTCTTTTTAGGAGT	3	203	0
TTAAAAAATAAACAAAATTTCTAATAAAAAAA	3	233	1
AAATAAGTGCAAAAAAATAAAAATGACATTTT	3	261	0
GATTTTTTTAAGAAAAATTAAAAAATAAACAA	3	216	1
GTTAACTAATATAAAAAAATAAACTCCTAAAA	3	181	1
GACTAGTTGAATCAAAACTAATCTGGTTATTT	3	34	1
GAAAATAAGTATCAAATTGAAAAGCTTTTAAA	0	27	1
CAACAAACCAAACAAGTTAACTAATATAAAAA	3	166	1
          * ****** ***
MAP Score: 8.16271

Motif 2
 AGATAGGTGATATTGTTGAAAATAAGTATCAAATTGA	0	9	1
TCACCTGAGTAGACTTGAACAAAAATCTATATATTTAC	3	94	1
AAAATCTATATATTTACTAATAATATATAGGAGTTTTA	3	115	1
CCAAACAAGTTAACTAATATAAAAAAATAAACTCCTAA	3	173	1
ATAAAAAAATAAACTCCTAAAAAGAGATTTTTTTAAGA	3	191	1
CTAAAAAGAGATTTTTTTAAGAAAAATTAAAAAATAAA	3	207	1
AAATAAACAAAATTTCTAATAAAAAAATGTCATTTTTA	3	238	1
          * ***  **  ** *  *
MAP Score: 1.47051