AlignACE 3.0 10/20/99
AlignACE2 -i MG/MG_sum_all006_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944238855
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MG109	59	serine/threonine protein kinase, putative
#1	MG115	24	conserved hypothetical protein
#2	MG122	39	DNA topoisomerase I (topA)
#3	MG364	63	conserved hypothetical protein

Motif 1
TTCAATTTGATACTTATTTTCAACAATATC	0	18	0
TAACTATAAATAAGGTTTTTGT        	2	2	0
TATAGTTAAGTAAGTAGTTTTATTA     	2	24	1
 TTAGGTTATTAATTAGTTTTAGAGTATAT	3	9	1
AATTAGTTTTAGAGTATATTATTATCTTGA	3	20	1
ATTATTATCTTGATTATATTGTAACTAGAA	3	37	1
          **********
MAP Score: 4.05411

Motif 2
CAATTTGATACTTATTTTCAACAATATCACCTAT	0	12	0
AAATAAGTATCAAATTGAAAAGCTTTTAAATAGG	0	29	1
    CCCACCCCTATTTAAAAGCTTTTCAATTTG	0	39	0
TACTTACTTAACTATAAATAAGGTTTTTGT    	2	6	0
TACTCTAAAACTAATTAATAACCTAA        	3	2	0
AGTTTTAGAGTATATTATTATCTTGATTATATTG	3	24	1
          * **** * *** *
MAP Score: 1.30066