AlignACE 3.0 10/20/99
AlignACE2 -i MJ/MJ_operons022_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944240853
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MJ0389	90	tyrosyl-tRNA synthetase (trS)
#1	MJ0884	300	activator 1 (replication factor C), 53 KD subunit
#2	MJ1156	119	cell division control protein 48 (cdc48), AAA family
#3	MJ1176	121	proteasome regulatory AAA-ATPase
#4	MJ1415	66	tryptophanyl-tRNA synthetase (trpS)
#5	MJ1422	30	activator 1 (replication factor C), 35 KD subunit
#6	MJ1423	202	vanadium nitrogenase-associated protein N
#7	MJ1494	151	AAA superfamily ATPase, similar to FtsH

Motif 1
TTAAGAGGTGTTGATAATAAATTCAACCAAAT	1	166	1
TTAAAGAGAATACATAATAAATATATTACAAC	4	11	1
ATTTTATCTTTTTATAATAATTTTCTCACTGG	2	81	0
GAACAGAAGATTGAAAATAAATTTAAGAATGA	1	13	1
TACCATAGCTTATATAATAAAGTTTTGCATGA	0	44	1
AAATTATTAATCCATAAAAAATT         	5	17	1
TATTGTGGATAATAAAATAAATAACATATGGT	6	37	1
AAGATTATTATTAAAAATGAATTAAAGGATGA	1	46	1
TAAGATTTTATAAATAATAACT          	6	0	0
       TTGTGTATAATTATTTCACAAATAT	2	3	1
AATAAAAATATTGATAATTATTGTTTTATTTG	1	195	1
TATTTTATTATCCACAATAAATTTTAAGATTT	6	24	0
TATTATTTGGATTAAAATAATTAGCTATAAAA	1	268	1
 AGTATCACCAAAATAATAAAGTAAATTTATA	0	9	1
       AGTTTAAAAATTATTAATCCATAAA	5	3	1
AATGATTTATTGAATAATGATGCCTTTAGGCA	6	143	0
ATATGGAATTATAATAAAAATTCTTATATTTA	3	20	0
TATGTTATTTAACAAAATTAATGAATGAATTA	6	70	1
TCCATAATAAAATAAAATGATTATAATATTCC	3	68	1
AAGGATGAACTAAAAAAAGAATTGGCTACAAA	1	70	1
AAATCTTTATATCAAAATGAAGG         	4	53	1
ATACCTTTTTAATATAAAAACTGCGAAGTTCT	6	106	0
ACTGCGAAGTTCTATATTAATTCATTCATTAA	6	87	0
AAGTTTTGCATGAACAAAAATGTTGTGGTGAT	0	63	1
GGACTTTCGCAGGAAAAATATTTTTATTGAAT	7	43	1
          *  *********
MAP Score: 26.5209