AlignACE 3.0 10/20/99
AlignACE2 -i MJ/MJ_sum_all043_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944245303
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MJ0397	300	DNA-directed RNA polymerase, subunit E' (rpoE1)

Motif 1
CAAATCCCCTCGGGTCCGCCAAT       	0	3	0
GATTTGAACCCCCGACCCCCGGCTTAGAAG	0	27	1
GCTTAGAAGGCCGGTGCCCTATCCAGGCTA	0	48	1
GGCTAGGCTACGGGTCCTCTTTATCTCAGG	0	73	1
          **********
MAP Score: 3.29682

Motif 2
TTATCTCAGGTTGTAAGCACTCTTTAAAATGAAT	0	93	1
GAATTTTCTCATATATATACTTTTCGTTTCATAA	0	123	1
GTTTCATAACTTATAACAATTTTTGTATGGTTAA	0	148	1
AAACCTATATTTATAATTAACCATACAAAAATTG	0	164	0
TAAATAATTAATGTAATTATTAATTTTGCCACAA	0	196	0
ATTAGTGAGATTATAAAAAACAATAAATAATTAA	0	219	0
AATCTCACTAATATGACGATTAGTTACTCTTTTT	0	241	1
          ******  * * **
MAP Score: 0.733331