AlignACE 3.0 10/20/99
AlignACE2 -i MJ/MJ_sum_all043_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944245306
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MJ0397	300	DNA-directed RNA polymerase, subunit E' (rpoE1)

Motif 1
TTTCGTTTCATAACTTATAACAATTTTTGT	0	144	1
TTTTGTATGGTTAATTATAAATATAGGTTT	0	168	1
TGTGGCAAAATTAATAATTACATTAATTAT	0	197	1
TAAAAAACAATAAATAATTAATGTAATTAT	0	210	0
TTATTTATTGTTTTTTATAATCTCACTAAT	0	223	1
TAGTTACTCTTTTTTTATTAAATTTAACTG	0	261	1
          **********
MAP Score: 3.20563