AlignACE 3.0 10/20/99 AlignACE2 -i MP/MP_fusions004_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944246415 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 MG260 300 Mycoplasma pneumoniae, MG260 homolog, from M. genitalium #1 MG260 297 Mycoplasma pneumoniae, MG260 homolog, from M. genitalium #2 putative 175 Mycoplasma pneumoniae, putative lipoprotein, MG260 homolog, from M. genitalium #3 R02_orf254 300 Mycoplasma pneumoniae, R02_orf254 Protein #4 MG260 38 Mycoplasma pneumoniae, MG260 homolog, from M. genitalium #5 putative 131 Mycoplasma pneumoniae, putative lipoprotein, MG260 homolog, from M. genitalium #6 rpmE 44 Mycoplasma pneumoniae, ribosomal protein L31; similar to Swiss-Prot Accession Number P02432, from E. coli #7 MG256 229 Mycoplasma pneumoniae, MG256 homolog, from M. genitalium #8 MG255 167 Mycoplasma pneumoniae, MG255 homolog, from M. genitalium #9 MG260 300 Mycoplasma pneumoniae, MG260 homolog, from M. genitalium #10 MG260 210 Mycoplasma pneumoniae, MG260 homolog, from M. genitalium #11 MG139 130 Mycoplasma pneumoniae, MG139 homolog, from M. genitalium #12 lysS 44 Mycoplasma pneumoniae, lysyl-tRNA synthetase; similar to Swiss-Prot Accession Number P37477, from B. subtilis Motif 1 TTAGTTGCTGGTATTTTTATTCACTTTGAAGAGAA 0 33 1 CTATCTTTATTTATTTTGTATGTGCCAAATTATTT 0 162 1 ATGTGCCAAATTATTTTTGACACATCAAATCAAAT 0 181 1 AAATCAAATATTATTTTTTATCATTCCCCTAAATT 0 207 1 GGCTCCGTTATTATTTTTAGCTTGCTCTAGTTTTT 1 17 0 TTCAGACTTATCCTTTTTCTCGGCTCCGTTATTAT 1 38 0 TCTTGCGGTCGTATTTTTCATCATTAAGCTTGCTA 1 159 0 TTATCCAGTTTTATTTTTTATAGTTTTAG 2 4 0 TGCGCTTAATTTCTTTTGGGGAGTTACACCGGGTA 2 81 1 TGTAAGATTTGGCTTTCTTTCTAGTGTTGCTGAA 2 151 1 CTATGCCTAGGTCTTTTTTATTGTTTTGGTAAGCC 3 153 1 CCGTTAATAGTGCTTTTTAGCAGTCAAATTTGAAA 5 13 0 GCTATCCAACTTATTTTTAACTTTTAAAAATAAAG 5 57 1 ATAATTTCCCATCTTTTTGGTGTTTTGTAAG 5 110 1 TAACTACTAGGTCTTTTGTGTATATAAATTAAATT 7 105 1 AGCTAATCAGGGCTTTTTATTAATTT 8 1 0 TTAGCTTACAGTATTTCTTCCACTTCTGGCTTTAA 9 34 1 ATTGTCATCAGTATTTTGACCATTTTGTTGGTCTG 9 164 0 AAAGGTTTTCTTCTTTTTTACTGTTATTGTCATCA 9 189 0 TAGTTGGGTTTTCTTTTGTTTGCTCTTGAGATCTA 10 84 1 AAAAAGAATCTGATTTTTGGGCAATTAATGGCTTT 10 133 0 AAAAATCAGATTCTTTTTACTTTCTTAAAAATATT 10 150 1 TATTAACTAATTATTTTGATCTTTTATAAGTA 11 108 1 ******** * * MAP Score: 19.4237 Motif 2 CTTTGAAGAGAAAAATCATTTGTTTAAACTCAAAAAGGTCAATAAT 0 56 1 TTGATGTGTCAAAAATAATTTGGCACATACAAAATAAATAAAGATA 0 163 0 CCTAGACCTAAAAAGCCACTAAAAGCAACTGCACCATATTTAAATC 0 262 0 AGAGCAAGCTAAAAATAATAACGGAGCCGAGAAAAAGGATAAGTCT 1 24 1 GAATGCTGACAAAAAGCATGTCTTTGAAATTAGCAAGCTTAATGAT 1 129 1 CTAAAACTATAAAAAATAAAACTGGATAACCAAGCATGTAATATGA 2 10 1 GTAACTCCCCAAAAGAAATTAAGCGCAAATTAACTATGCCGCTTTA 2 62 0 CAGCAACACTAGAAAGAAAGCCAAATCTTACAAAAACGCGCTAAGC 2 137 0 TTTCAGTGAGAATAGGAAAGCACCAAGCGTCAAGAAGATAAAAGAG 3 99 1 TACTTTGCGAAAAAAACAGAAAACTCCAAGCAATCAATTAAAGCTT 3 214 1 TTTAAAAGTTAAAAATAAGTTGGATAGCTCCAATAATCCGTTAATA 5 39 0 GCGGGAAAGGAAAAAGTAAGGGTAAAGGCGGAAGCAGCAGTAAT 9 266 1 AAGAGCAAACAAAAGAAAACCCAACTACTGGCAAAAACAGCCTTAT 10 65 0 AATGCATACAAAAAGCCATTAATTGCCCAAAAATCAGATTCTTTTT 10 122 1 GCAAATCTTAAAAAAATATTTTTAAGAAAGTAAAAAGAATCTGATT 10 153 0 GACAAATTTAAAAAATTATTATCTTAATTTTAAGCAATTA 12 4 0 ***** * ** ** MAP Score: 17.9632 Motif 3 TTTCTCTTCAAAGTGAATAAAAATACCAGCAAC 0 36 0 ATTCACTTTGAAGAGAAAAATCATTTGTTTAAA 0 51 1 TCATTTGTTTAAACTCAAAAAGGTCAATAATTT 0 71 1 ATTTAGGGGAATGATAAAAAATAATATTTGATT 0 208 0 AAACTAGAGCAAGCTAAAAATAATAACGGAGCC 1 19 1 GATAAGTCTGAAACTAAAACCAATGAAAACAAA 1 61 1 AAAACTATAAAAAATAAAACTGGATAACCAAGC 2 12 1 AAGCGTCAAGAAGATAAAAGAGACTTAGGCCTA 3 123 1 GCTTACCAAAACAATAAAAAAGACCTAGGCATA 3 154 0 TTTTTTTCGCAAAGTAAAAACAGCTATAAAATG 3 197 0 TTATTTTTAAAAGTTAAAAATAAGTTGGATAGC 5 57 0 AAATTAATAAAAAGCCCTGATTA 8 0 1 TCTTATCGGCAAACGAATACTTAAAGCCAGAAG 9 56 0 GATGACAATAACAGTAAAAAAGAAGAAAACCTT 9 190 1 GGTACCTTTGAAGTTAAAGATTACTCGAAATCT 9 226 1 TAAAGGCGGGAAAGGAAAAAGTAAGGGTAAAGG 9 261 1 AAGAGCAAACAAAAGAAAACCCAACTACTGGCA 10 78 0 TATTTTTAAGAAAGTAAAAAGAATCTGATTTTT 10 150 0 CTTCCCAAGCGAAAAAAGATGGCAAATCT 10 191 0 TACTTATAAAAGATCAAAATAATTAGTTAATA 11 108 0 *** ****** * MAP Score: 17.9428 Motif 4 TTTTCTCTTCAAAGTGAATAAAAATACCAGCAACTAATC 0 31 0 GAAATTTAGGGGAATGATAAAAAATAATATTTGATTTGA 0 205 0 CAAAAACTAGAGCAAGCTAAAAATAATAACGGAGCCGAG 1 16 1 ACGAGTTTCCTGAATGCTGACAAAAAGCATGTCTTTGAA 1 118 1 ATTAGCAAGCTTAATGATGAAAAATACGACCGCAAGATT 1 157 1 CCTGGTAAATACAGTGCCGAAAACCAGCATAAGGTA 1 271 1 GTTTCAAATTTGACTGCTAAAAAGCACTATTAACGGATT 5 12 1 AACTTATTTTTAACTTTTAAAAATAAAGAATTTGCACCA 5 64 1 TAGCTTTAATATACTAAAATTATGAGCTGCGCAGA 8 142 0 GCGACTTAATTTCCTGAGTAAAATCAGGATATTCAACGA 9 125 0 CCAGACCAACAAAATGGTCAAAATACTGATGACAATAAC 9 163 1 CTGATGACAATAACAGTAAAAAAGAAGAAAACCTTTTAG 9 188 1 TGAGATCTAATTAATGCATACAAAAAGCCATTAATTGCC 10 110 1 AAAAAGCCATTAATTGCCCAAAAATCAGATTCTTTTTAC 10 131 1 TACTTATAAAAGATCAAAATAATTAGTTAATACCT 11 105 0 TAATTGCTTAAAATTAAGATAATAATTTT 12 0 1 * * ** **** * * MAP Score: 16.6999 Motif 5 TAAACTATCTTTATTTATTTTGTATGTGCCAAATTA 0 158 1 GCAGTTGCTTTTAGTGGCTTTTTAGGTCTAGGTG 0 276 1 AGTTTCAGACTTATCCTTTTTCTCGGCTCCGTTATT 1 40 0 TTTGTAAGATTTGGCTTTCTTTCTAGTGTTGCTGAA 2 149 1 TGCCTAGGTCTTTTTTATTGTTTTGGTAAGCCAAAA 3 156 1 TTGCTTGGAGTTTTCTGTTTTTTTCGCAAAGTAAAA 3 211 0 TGCTGTATAATTTCCCATCTTTTTGGTGTTTTGTAA 5 104 1 CTTCAAGCGCTTAGCGTTCTTATCGGCAAACGAATA 9 70 0 CATCAGTATTTTGACCATTTTGTTGGTCTGGCGACT 9 158 0 ACCTAAAAGGTTTTCTTCTTTTTTACTGTTATTGTC 9 193 0 ACTTTTTCCTTTCCCGCCTTTATTAGATTTCGAGTA 9 247 0 TTATTGGAAATTAACACCTTTATAAGGCTGTTTTTG 10 44 1 TTTTTAAGATTTGCCATCTTTTTTCGCTTGGGAAG 10 185 1 AAATAATTAGTTAATACCTTTACAAGGTATCAGTAA 11 88 0 AACTAATTATTTTGATCTTTTATAAGTA 11 112 1 ATAATAATTTTTTAAATTTGTCTTCG 12 28 1 ** * **** ** * MAP Score: 11.1886 Motif 6 TGGTGCAGTTGCTTTTAGTGGCTTTTTAGGTCTAG 0 272 1 TGTTTTCATTGGTTTTAGTTTCAGACTTATCCTTT 1 57 0 CGATGACTGTGCCTTTGTTTTCATTGGTTTTAGTT 1 72 0 TCAAAGACATGCTTTTTGTCAGCATTCAGGAAACT 1 121 0 ACCTTATGCTGGTTTTCGGCACTGTATTTACCAGG 1 271 0 ATGCTTAGCGCGTTTTTGTAAGATTTGGCTTTCTT 2 135 1 TGTAAGATTTGGCTTTCTTTCTAGTGTTGCTGAA 2 151 1 CTATGCCTAGGTCTTTTTTATTGTTTTGGTAAGCC 3 153 1 GATAATTAAAGGCTTTGGTACTAGTCAAAACCAAA 3 263 1 TAACTACTAGGTCTTTTGTGTATATAAATTAAATT 7 105 1 GCTAATCAGGGCTTTTTATTAATTT 8 0 0 CCAACCAGGTGCTTTTAGGAAAATTTAATATGGAG 8 43 1 TCCACTTCTGGCTTTAAGTATTCGTTTGCCGATAA 9 52 1 GTACCTAAAAGGTTTTCTTCTTTTTTACTGTTATT 9 196 0 TTCCTTTCCCGCCTTTATTAGATTTCGAGTAATCT 9 243 0 CCAGTAGTTGGGTTTTCTTTTGTTTGCTCTTGAGA 10 80 1 GCAATTAATGGCTTTTTGTATGCATTAATTAGATC 10 113 0 ****** ** ** MAP Score: 11.0981 Motif 7 ACTCCCCAAAAGAAATTAAGCGCAAATTAACTATGC 2 69 0 TGACAATAACAGTAAAAAAGAAGAAAACCTTTTAGG 9 192 1 AGATCTCAAGAGCAAACAAAAGAAAACCCAACTACT 10 82 0 TAAAAATACCAGCAACTAATCTCTAAGACTAACTGC 0 16 0 ACAAGGTATCAGTAATTAAACAGTAATCAATTATAA 11 67 0 AAAAGCAATAAATATATAATCTAAGCCGT 6 3 1 TTTTACTTTGCGAAAAAAACAGAAAACTCCAAGCAA 3 211 1 CAGCAACACTAGAAAGAAAGCCAAATCTTACAAAAA 2 147 0 AATAAAGGCGGGAAAGGAAAAAGTAAGGGTAAAGGC 9 259 1 AATATTTTTAAGAAAGTAAAAAGAATCTGATTTTTG 10 149 0 ACAGCGACATGGGCACCAAACAAAAACGA 3 3 0 AAGCACCAAGCGTCAAGAAGATAAAAGAGACTTAGG 3 116 1 AAAATTCCTTAGATATAAATCGCTAAACTATCTTTA 0 135 1 CAAAAACTAGAGCAAGCTAAAAATAATAACGGAGCC 1 16 1 ** ** ** * *** MAP Score: 9.24293 Motif 8 TTATCCTGCCAGCACCTGGTAAATACAGTG 1 257 1 TTTTCCTAAAAGCACCTGGTTGGCATTGTA 8 36 0 TCGCTGTGGAAACACCTGGTTCCATTTCGA 3 32 1 TTTGGGGAGTTACACCGGGTAGAGGGCGAG 2 95 1 ATATACACAAAAGACCTAGTAGTTAACTAG 7 100 0 AATTATCACAGAGACCTAGTTAACTACTAG 7 85 1 AACAATAAAAAAGACCTAGGCATAGGCCTA 3 148 0 TTCCACCCCCGCCACCTAGTG 7 218 1 ********** MAP Score: 5.42516 Motif 9 CCTGGTTCCATTTCGAACCCAGCAGTTAAG 3 46 1 TTTTGACTAGTACCAAAGCCTTTAATTATC 3 263 0 TACTAGTCAAAACCAAAGCCGATTTTTTC 3 281 1 ATAAATATATAATCTAAGCCGTTGCTTTGT 6 17 1 TCCCTAGAGGAATCGAACCTCCATTTACTG 7 49 0 GGGTGGAAGGAATCGAACCCACACAGACAG 7 196 0 AGATAACGGGAATCGAACCCGCATCTTAAC 8 79 1 ********** MAP Score: 3.27124 Motif 10 GCAGTTGCTTTTAGTGGCTTTTTAGGTCTAGGTG 0 276 1 CAAGATTATCGTTGGTGCTACTGAGGAACAATTAGA 1 189 1 TAATTTGCGCTTAATTTCTTTTGGGGAGTTACACCG 2 76 1 ATTAAAATGATTAACCGCTAAGGGGGTGTAGTTTAG 7 137 1 CTGGTTGGCATTGTAAGCTAATCAGGGCTTTTTATT 8 15 0 TATACTAAAATTATGAGCTGCGCAGATATAGTTCAA 8 132 0 GGGTTTTCTTTTGTTTGCTCTTGAGATCTAATTAAT 10 89 1 TTTGCCATCTTTTTTCGCTTGGGAAG 10 194 1 AGCAAATGACTAAACAGCTCTTGGGGGAGCTCCACA 11 10 0 ** *** ***** MAP Score: 0.627796