AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_operons011_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247175
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	P115	184	Mycoplasma pneumoniae, P115 protein homolog; similar to GenBank Accession Number JQ0894, from M. hyorhinis
#1	MG294	130	Mycoplasma pneumoniae, MG294 homolog, from M. genitalium

Motif 1
        ACTTAATTAAGCTTAATTTTTTT	0	2	1
TTAATTAAGCTTAATTTTTTTAACTGAACCG	0	12	1
CATTACTAGATTATTCTAGTTGGCTTTAAGG	0	135	0
         TTAAATCAGGTTAGATTTTGCA	0	172	0
AAACGTTTTTCTAATTTATTTTTTGGCAAGC	1	51	1
AATTATGGGGTTAATCCGGTTAGCTTGCCAA	1	73	0
AATTACGCCATTATTTTAGTGGTAATTATGG	1	96	0
AAATAATGGCGTAATTTCGTTGTGTCACA  	1	111	1
          ******* ***
MAP Score: 3.25531

Motif 2
ATACTTACTTACAATCTAACTATCATGAGCGG	0	40	0
TTCCTTAAAGCCAACTAGAATAATCTAGTAAT	0	133	1
AACCGGATTAACCCCATAATTACCACTAAAAT	1	83	1
CCCCATAATTACCACTAAAATAATGGCGTAAT	1	94	1
    TGTGACACAACGAAATTACGCCATTATT	1	112	0
          ***** *** **
MAP Score: 0.994187