AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_operons014_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247242
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MG328	300	Mycoplasma pneumoniae, MG328 homolog, from M. genitalium
#1	MG269	300	Mycoplasma pneumoniae, MG269 homolog, from M. genitalium
#2	P65	133	Mycoplasma pneumoniae, protein P65; similar to GenBank Accession Number Z34977, from M. pneumoniae
#3	MG211	206	Mycoplasma pneumoniae, MG211 homolog, from M. genitalium

Motif 1
GGGTAATGTTACGGGTTTTGGGCATGAGTTG	0	59	0
TATGGTAGATATGGTGTGGTCAAAAGCCAAC	0	208	1
ACACATCAACATGGGGTTGGCTTTTGACCAC	0	223	0
TGTTAGATCAACGGTTTGCGGTTTATGAACT	0	279	0
TCATACGGAAACTGGTTAGGGTCAAAGTCGT	1	16	0
TTTCCGTATGACTGGGTGGTGGAACGGGTTA	1	36	1
GGGTGGTGGAACGGGTTAGTGATGTCAAGGA	1	49	1
GCAATCTTTAACAGTGTTGGGCAGTATGTCA	1	210	1
ATTAAAATTAATGGTATAGTGTCAGCTTTGC	2	87	1
AAAAGTTTAAACGGGTTTCGCTAGAAATTCG	3	55	1
          ******* ***
MAP Score: 10.3892

Motif 2
AGTTGCTTGAGCAAACTTTGTTCGTTTAAGTT	0	32	0
CAATCAATTCGCAATTTTTTTCACTTTATGGT	0	182	1
TTTTGTGTTAGCAATCTTTAACAGTGTTGGGC	1	200	1
TGATGCTGTAACTATCTTTTTCCGTGAAAAGG	1	272	1
TGTAAGGCTTGCAAGCTTTGCCGTCATTTTCA	2	17	1
GTTTTTAACTTCAATCTTTGGCA         	3	1	0
TCACGCAAGCGCATTCCTTTTCGAAGGTGGTA	3	108	0
TTTCTTCTGCGCAATCTTTCGCTTTTCACGCA	3	133	0
          *********  *
MAP Score: 10.3679

Motif 3
ACGAACAAAGTTTGCTCAAGCAACTCATGCCCAA	0	39	1
ACTGATCTAATTCGCCAAAGAAACTACGTTCTAC	0	137	0
TCAAGGATTATTTGCTCAATCCGCGTGATTTTAG	1	73	1
AAGTTTCTACATCGCTAAAATCACGCGGATTGAG	1	87	0
AGAAGGGGATTTTGCTCGAATAACACGCATAAAA	1	153	0
TAGTGTCAGCTTTGCTGTTGGCACCTTTTAAAGA	2	103	1
TTAAACGGGTTTCGCTAGAAATTCGCCGTTTAGC	3	61	1
TGCGCAATCTTTCGCTTTTCACGCAAGCGCATTC	3	124	0
          ******  *  ***
MAP Score: 5.23334

Motif 4
GAACAATCAATTCGCAATTTTTTTCACTTTAT	0	179	1
GTGCTAAGATTAAGCACTTTTATGCGTGTTAT	1	136	1
TAGTTTTGTGTTAGCAATCTTTAACAGTGTTG	1	197	1
CCTGATGCTGTAACTATCTTTTTCCGTGAAAA	1	270	1
CATTTATTCATTTGCATTTTTTTAGATAAATT	2	58	1
AGCTTTGCTGTTGGCACCTTTTAAAGACAGTA	2	110	1
GCGTTTCTTCTGCGCAATCTTTCGCTTTTCAC	3	136	0
TACTAGCACCTTACCAGTTTTAT         	3	193	1
          ** *** *****
MAP Score: 4.19975

Motif 5
TCGTTTAAGTTTTCGTCAAAATCGTGGATACCT 	0	9	0
TTCTACAATGTTACGTTCTAGGGGAACTGTTATT	0	109	0
CCTAACCAGTTTCCGTATGACTGGGTGGTGGAAC	1	27	1
AAGCACTTTTATGCGTGTTATTCGAGCAAAATCC	1	147	1
AACTATCTTTTTCCGTGAAAAGGCCTTAA     	1	281	1
AGGAATGCGCTTGCGTGAAAAGCGAAAGATTGCG	3	122	1
ACGCCGTAAGTTTCGTAATATGGTCTAGTTACTA	3	164	1
          ** *** * * ***
MAP Score: 3.70693

Motif 6
 AGGTATCCACGATTTTGACGAAAACTTAAACGAACAAAGTT	0	9	1
GCAACTCATGCCCAAAACCCGTAACATTACCCTAGAACCAAC	0	58	1
AATAACAGTTCCCCTAGAACGTAACATTGTAGAACGTAGTTT	0	109	1
AGAGAAAGAACAATCAATTCGCAATTTTTTTCACTTTATGGT	0	172	1
ACTCCAAGTTCATAAACCGCAAACCGTTGATCTAACA     	0	273	1
GGATTATTTGCTCAATCCGCGTGATTTTAGCGATGTAGAAAC	1	77	1
ACTATGCGTGCTAAGATTAAGCACTTTTATGCGTGTTATTCG	1	129	1
AACTAGTAAACAAAAAGAAGGGGATTTTGCTCGAATAACACG	1	160	0
AATGCGCTTGCGTGAAAAGCGAAAGATTGCGCAGAAGAAACG	3	125	1
          *    *   ** **  ***  *
MAP Score: 2.38067

Motif 7
GGAAACAATAACAGTTCCCCTAGAACGTAACATTGTAG	0	103	1
AACTTTTTTAAAGCTAACTCTAAATCATCGTTTTTAAC	3	24	0
AAAGTTTAAACGGGTTTCGCTAGAAATTCGCCGTTTAG	3	56	1
CAATCTTTCGCTTTTCACGCAAGCGCATTCCTTTTCGA	3	116	0
CAAAACCCGTAACATTACCCTAGAACCAACAAGGGAAA	0	70	1
GCCAACAGCAAAGCTGACACTATACCATTAATTTTAAT	2	87	0
TAAACGAACAAAGTTTGCTCAAGCAACTCATGCCCAAA	0	36	1
 TCCAACACGACTTTGACCCTAACCAGTTTCCGTATGA	1	9	1
TGTTCGTTTAAGTTTTCGTCAAAATCGTGGATACCT  	0	8	0
          *   *  * ***** * *
MAP Score: 2.25599