AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_operons016_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247340
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	arcA	53	Mycoplasma pneumoniae, arginine deiminase; similar to Swiss-Prot Accession Number P41142, from P. putida
#1	argI	247	Mycoplasma pneumoniae, ornithine carbamoyl transferase; similar to Swiss-Prot Accession Number P04391, from E. coli
#2	arcA	300	Mycoplasma pneumoniae, arginine deiminase; similar to Swiss-Prot Accession Number P23793, from M. capricolum

Motif 1
AATAATTAACAATTGCTTTAATTGCGTTAC	0	14	0
CTTAAAAGGTCGTAGCCTTGACTCTGCTTT	1	48	1
GTAGCCTTGACTCTGCTTTAAACTTTACTA	1	59	1
TTGACCTCGCCATTGATTTAAAACGCAGTA	1	110	1
CGGGGAAGAACATTGTTTTACTGTTCCAAA	1	174	1
AAGTGGCTGCCTTTGACTTGGGT       	1	234	1
TTCTTCAGACCGTTGCTCTACCGACTGAGC	2	47	0
ACTTTCTTACCTTACCTTTAAAACTAAGGG	2	118	1
AATAAAAAACCTTACCCTTAGTTTTAAAGG	2	132	0
ACAGCTGTTGTACTGCCTTAAATAAAGGTG	2	168	0
ATCAAGTTCACTTTGCCTTTTTTTCTTGGG	2	224	1
AGGCTAAGCTTACTGCTTTAATTGTTACAC	2	267	0
AAGCAGTAAGCTTAGCCTTATTACATGTAA	2	279	1
          **********
MAP Score: 10.9894

Motif 2
ATAATTAACAATTGCTTTAATTGCGTTACT	0	13	0
TAGCCTTGACTCTGCTTTAAACTTTACTAC	1	60	1
AAACTTTACTACTGCTCAAATTAACTATTT	1	78	1
TGACCTCGCCATTGATTTAAAACGCAGTAA	1	111	1
CAGCTGTTGTACTGCCTTAAATAAAGGTGG	2	167	0
AGGCAGTACAACAGCTGTAAATTAGTTGCC	2	180	1
GGCTAAGCTTACTGCTTTAATTGTTACACG	2	266	0
          **********
MAP Score: 9.79612

Motif 3
AATTAACAATTGCTTTAATTGCGTTACTTC	0	11	0
GCCTTGACTCTGCTTTAAACTTTACTACTG	1	62	1
ACTTTACTACTGCTCAAATTAACTATTTAA	1	80	1
GCTGTTGTACTGCCTTAAATAAAGGTGGTA	2	165	0
GTAAATTAGTTGCCCAATTCTTTTTGCAAT	2	196	1
AAGTTCACTTTGCCTTTTTTTCTTGGGCTT	2	227	1
CTAAGCTTACTGCTTTAATTGTTACACGTC	2	264	0
          **********
MAP Score: 5.35875

Motif 4
TTGCTTTAATTGCGTTACTTCC        	0	2	0
       TTTTTCTTTATTTACTTATACAA	1	3	1
ACTTTACTACTGCTCAAATTAACTATTTAA	1	80	1
CGGTTCTGGATGTGCAACTTGGTATTTACT	1	136	0
GGAAGAACATTGTTTTACTGTTCCAAAAAG	1	177	1
TTCAGACCGTTGCTCTACCGACTGAGCTAC	2	44	0
AAGGGTAAGGTTTTTTATTGCTTACCACCT	2	143	1
AATTTACAGCTGTTGTACTGCCTTAAATAA	2	173	0
CTAAGCTTACTGCTTTAATTGTTACACGTC	2	264	0
          **********
MAP Score: 1.17006