AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_operons019_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247405
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yfiB	86	Mycoplasma pneumoniae, hypothetical protein (yfiB) homolog; similar to Swiss-Prot Accession Number P27712, from S. citri
#1	tim	52	Mycoplasma pneumoniae, triosephosphate isomerase; similar to Swiss-Prot Accession Number P00943, from E. coli
#2	cbiO	157	Mycoplasma pneumoniae, abc transport ATP-binding protein; similar to Swiss-Prot Accession Number Q05596, from S. typhimurium
#3	gap	30	Mycoplasma pneumoniae, glycerladehyde-3-phosphate dehydrogenase; similar to GenBank Accession Number S34254, from C. pasteurianum

Motif 1
CAGGCTTAAATTTAATATTTATTAGGTACAA	0	25	0
ATTCCAAGTCCTCCTTTTTCATCATTTTGCC	0	65	0
TAACTGCCCTCTTTTTATTGATCTACTGCAA	2	16	0
AGTTAAACTGCTCTTTTTTTATGTCTTATTT	2	42	1
CTTTTTTTATGTCTTATTTGACCTGTAATAA	2	54	1
TTCAATTAGTCTTATTTTTAAAATTTAAAAA	2	124	1
  TTTAAGTTTTTATTTTTAAATTTTAAAAA	2	138	0
CTCTAATTAGTTTATATTTTACTACT     	3	5	0
          ********* *
MAP Score: 6.25783

Motif 2
CAAGTCCTCCTTTTTCATCATTTTGCCAATTGC	0	59	0
TTTAAGCACTTTTTAAACCATTTTTTCAATTAG	2	100	1
AAACTGCTCTTTTTTTATGTCTTATTTGACCTG	2	46	1
ACGTTAAAGATTTTATAAGTTTTATTGATTAAC	1	29	0
AATTAGTCTTATTTTTAAAATTTAAAAATAAAA	2	127	1
TAATAATGGTTTATAGACGTCTTTAAGCACTTT	2	79	1
          ***** *  ****
MAP Score: 3.1886