AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_operons020_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247432
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	yabB	300	Mycoplasma pneumoniae, hypothetical protein (yabB) homolog; similar to Swiss-Prot Accession Number P22186, from E. coli
#1	rpsB	300	Mycoplasma pneumoniae, ribosomal protein S2; similar to Swiss-Prot Accession Number P34831, from S. platensis

Motif 1
CTGGTAGGTTAGAAAGTATTATGGCGTCACCA	0	45	0
AAAAGTAAGTCAAAGGTGGTTTCATCCACCGT	0	115	0
TTGTAAACCCAAAAAGTGGTCTTGTAAACCAC	0	145	1
GTAAAAGGCACCAAAGTGGTTTACAAGACCAC	0	160	0
CTTTGCTGTTCCAAAGCGCTTTTTTTAGGTTT	0	191	1
TTCTTTTAGCCAAAAAAGTTTTTTTATTCTAA	0	231	1
ATTCTAAGATATAAAGTGTTTTAAAGTGTCAC	0	256	1
ACAAAGTGGCATAAAGTGGTAAAA        	0	286	1
CATTTTTGTGCCAAAGTGTTAAGCCAAACATT	1	211	0
CACTTTGGCACAAAAATGGTGTTGGTTAGCAA	1	225	1
          * ******** *
MAP Score: 14.9118

Motif 2
CCTGGTAGGTTTTTTATTTGCTCCGTTGGCT	0	83	1
AAGACCACTTTTTGGGTTTACAAAAGTAAGT	0	137	0
CTTTGGTGCCTTTTACTTTGCTGTTCCAAAG	0	176	1
AAGCGCTTTTTTTAGGTTTGCTGGCAGTTCT	0	204	1
ACTTATTTTGATTTTGTTAGCAATAACACCA	1	77	1
ACAGGTGACTTTTTGGTTTGCTTTAGATGTG	1	113	0
GATGACAATGTTTGGCTTAACACTTTGGCAC	1	205	1
ACAAAAATGGTGTTGGTTAGCAATCATTAAT	1	234	1
GCAATCATTAATTAAGTTAACTTGCTCTGTT	1	253	1
          *** *******
MAP Score: 11.6955

Motif 3
  CTTGCGGAGCTGAGGGTTACAGGTTCGATTC	0	8	1
CCGTTGGCTCACGGTGGATGAAACCACCTTTGA	0	105	1
AAAAGGCACCAAAGTGGTTTACAAGACCACTTT	0	157	0
TCTAAGATATAAAGTGTTTTAAAGTGTCACAAA	0	258	1
AAAGTGTCACAAAGTGGCATAAAGTGGTAAAA 	0	278	1
AATTCTTATTAAGGAGGATGACAATGTTTGGCT	1	189	1
TTGGCTTAACACTTTGGCACAAAAATGGTGTTG	1	216	1
          ** **** * ***
MAP Score: 4.1738