AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_profile003_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944247577
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	mtlA	300	Mycoplasma pneumoniae, PTS system mannitol-specific component IIA (EIIA-MTL); similar to Swiss-Prot Accession Number P28008, from S. carnosus
#1	yihA	287	Mycoplasma pneumoniae, hypothetical protein (yihA) (era like) homolog; similar to Swiss-Prot Accession Number P24253, from E. coli
#2	hypothetical	27	Mycoplasma pneumoniae, hypothetical protein (HI1366) homolog; similar to GenBank Accession Number G64026, from H. influenzae
#3	H10_orf206	38	Mycoplasma pneumoniae, H10_orf206 Protein

Motif 1
ATTCAGTCTTTGGATTCATTGCTTTCATCAATGA	0	18	1
CAATAATCGGCATCGTCATTGATGAAAGCAATGA	0	33	0
CGATTATTGGCATCTTTATTGCTTGGGGACTTTT	0	58	1
GATAAAAACCTAGCTTTAATGGTGGAATAGGAAT	0	126	1
CCGACCATAATTGTTTTTTTGGTGGTAAAAAGAT	0	173	1
AAATACGTGGTGGTGTGATTGCTGTCATTATTGC	0	212	1
TTGCTGTCATTATTGCCATTGCTGTAATAGCTGC	0	230	1
GACCAACAATTTTTGTAAATGCTTCGGTTTGACC	0	265	0
CCCTGTTAGTCGGTGTCATTATTGGCTATTTTAT	1	111	1
TAATTTGGTTTTCGGTGATTGGTGGGTTATCACG	1	173	0
ATTAATTACTTCTGGTTTTTAATGGAGCGCATAA	1	261	0
  ACTGAACTAATTGTTATTGTTTAAATT     	2	5	0
          * * ** **** **
MAP Score: 10.9792

Motif 2
GCATCGTCATTGATGAAAGCAATGAATCCAAAGA	0	24	0
TTTTATCAGGTGTTCAACCAGATGGAATAAAAAA	0	99	0
GTTGAACACCTGATAAAAACCTAGCTTTAATGGT	0	115	1
GTAAAAAGATTTATGAAATACGTGGTGGTGTGAT	0	197	1
TTATTGCCATTGCTGTAATAGCTGCTGGTCAAAC	0	239	1
TAATAGCTGCTGGTCAAACCGAAGCATTTACAAA	0	254	1
CAAAAATTGTTGGTCAAAAATCAGTA        	0	284	1
CTCTCTAGAATCTTATAAAATCAGAATAGCGTAA	1	13	0
GAAAGGGGAATTCCCAAACCTAAGGCAAGCGCAA	1	78	0
TCTATCAAAATCTTTAAAAAACAGATTCGTGATA	1	146	1
GTCGTAAGCTTTCTGAAACACAAGTCAAGGAAAT	1	228	1
ATTATGCGCTCCATTAAAAACCAGAAGTAATTAA	1	260	1
TTATTTTACATTTTTAAAATTAAGCTCATCAAG 	3	9	0
          ** * *** * ***
MAP Score: 8.63112

Motif 3
CTTTGGATTCATTGCTTTCATCAATGACGATGCCGATTATT	0	25	1
GACGATGCCGATTATTGGCATCTTTATTGCTTGGGGACTTT	0	50	1
CCAATATGTGATTCCGACCATAATTGTTTTTTTGGTGGTAA	0	160	1
TGGTAAAAAGATTTATGAAATACGTGGTGGTGTGATTGCTG	0	195	1
TGGTGGTGTGATTGCTGTCATTATTGCCATTGCTGTAATAG	0	219	1
CATTATTGCCATTGCTGTAATAGCTGCTGGTCAAACCGAAG	0	237	1
TTAAGATTAAGATATAGATATGAATGATCTTGCGCTTGCCT	1	49	1
TTCCCTGTTAGTCGGTGTCATTATTGGCTATTTTATTTCTA	1	109	1
CGAAAACCAAATTAAGGCGATGTATGCCAAAATGGGTCGTA	1	193	1
          ***   *  **   ** *  *
MAP Score: 7.25018

Motif 4
TCCATCTGGTTGAACACCTGATAAAAACCT	0	107	1
GAACACCTGATAAAAACCTAGCTTTAATGG	0	118	1
TTTTACCACCAAAAAAACAATTATGGTCGG	0	173	0
TACTGATTTTTGACCAACAATTTTTGTAAA	0	280	0
TCAAAATCTTTAAAAAACAGATTCGTGATA	1	150	1
AACAGATTCGTGATAACCCACCAATCACCG	1	165	1
CACCAATCACCGAAAACCAAATTAAGGCGA	1	183	1
GTAAGCTTTCTGAAACACAAGTCAAGGAAA	1	231	1
TGCGCTCCATTAAAAACCAGAAGTAATTAA	1	264	1
      AATTTAAACAATAACAATTAGTTC	2	4	1
          **********
MAP Score: 1.12934

Motif 5
CATCAATGACGATGCCGATTATTGGCATCT	0	43	1
TCACATATTGGATTCCTATTCCACCATTAA	0	141	0
TCCAATATGTGATTCCGACCATAATTGTTT	0	159	1
TTCTAGAGAGGATTAAGATTAAGATATAGA	1	37	1
AGCCAATAATGACACCGACTAACAGGGAAA	1	108	0
GTTTCAGAAAGCTTACGACCCATTTTGGCA	1	217	0
          **********
MAP Score: 0.407785