AlignACE 3.0 10/20/99
AlignACE2 -i MP/MP_sum_all011_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248286
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	MG260	300	Mycoplasma pneumoniae, MG260 homolog, from M. genitalium
#1	MG260	297	Mycoplasma pneumoniae, MG260 homolog, from M. genitalium
#2	putative	175	Mycoplasma pneumoniae, putative lipoprotein, MG260 homolog, from M. genitalium
#3	MG260	38	Mycoplasma pneumoniae, MG260 homolog, from M. genitalium
#4	putative	131	Mycoplasma pneumoniae, putative lipoprotein, MG260 homolog, from M. genitalium
#5	MG260	300	Mycoplasma pneumoniae, MG260 homolog, from M. genitalium
#6	MG260	210	Mycoplasma pneumoniae, MG260 homolog, from M. genitalium

Motif 1
GTTGCTGGTATTTTTATTCACTTTGAAGAGAAA	0	36	1
TTTAAACAAATGATTTTTCTCTTCAAAGTGAAT	0	51	0
AATCAAATATTATTTTTTATCATTCCCCTAAAT	0	208	1
GGCTCCGTTATTATTTTTAGCTTGCTCTAGTTT	1	19	0
TTCAGACTTATCCTTTTTCTCGGCTCCGTTATT	1	40	0
TTTGTTTTCATTGGTTTTAGTTTCAGACTTATC	1	61	0
TCCAGTTTTATTTTTTATAGTTTTAG       	2	3	0
CCGTTAATAGTGCTTTTTAGCAGTCAAATTTGA	4	15	0
GCTATCCAACTTATTTTTAACTTTTAAAAATAA	4	57	1
CTTCTGGCTTTAAGTATTCGTTTGCCGATAAGA	5	56	1
AAGGTTTTCTTCTTTTTTACTGTTATTGTCATC	5	190	0
AGATTTCGAGTAATCTTTAACTTCAAAGGTACC	5	226	0
CCTTTACCCTTACTTTTTCCTTTCCCGCCTTTA	5	261	0
       ACCTTAGTTTTAACTAATTCTCAATT	6	3	1
TGCCAGTAGTTGGGTTTTCTTTTGTTTGCTCTT	6	78	1
AAAAATCAGATTCTTTTTACTTTCTTAAAAATA	6	150	1
AGATTTGCCATCTTTTTTCGCTTGGGAAG    	6	191	1
          *  ****** ***
MAP Score: 17.6845

Motif 2
TTCTCTTCAAAGTGAATAAAAATACCAGCAACTAA	0	33	0
GTACCTCAGCATTTTTTAAAAATTATTGACCTTTT	0	88	0
AATTTGGCACATACAAAATAAATAAAGATAGTTTA	0	158	0
ATTTGATTTGATGTGTCAAAAATAATTTGGCACAT	0	181	0
AATTTAGGGGAATGATAAAAAATAATATTTGATTT	0	207	0
AAAAACTAGAGCAAGCTAAAAATAATAACGGAGCC	1	17	1
ATAATAACGGAGCCGAGAAAAAGGATAAGTCTGAA	1	38	1
TAGCAAGCTTAATGATGAAAAATACGACCGCAAGA	1	159	1
      CTAAAACTATAAAAAATAAAACTGGATAA	2	4	1
TACCCGGTGTAACTCCCCAAAAGAAATTAAGCGCA	2	81	0
CTTTATTTTTAAAAGTTAAAAATAAGTTGGATAGC	4	57	0
    CTTACAAAACACCAAAAAGATGGGAAATTAT	4	110	0
CAGACCAACAAAATGGTCAAAATACTGATGACAAT	5	164	1
TGATGACAATAACAGTAAAAAAGAAGAAAACCTTT	5	189	1
AATAAAGGCGGGAAAGGAAAAAGTAAGGGTAAAGG	5	259	1
CCAATTGAGAATTAGTTAAAACTAAGGT       	6	3	0
TAGATCTCAAGAGCAAACAAAAGAAAACCCAACTA	6	84	0
AATATTTTTAAGAAAGTAAAAAGAATCTGATTTTT	6	150	0
          *   *  ********
MAP Score: 12.5944

Motif 3
TAGTTGCTGGTATTTTTATTCACTTTGAAGAGAA	0	34	1
ATGTGCCAAATTATTTTTGACACATCAAATCAAA	0	181	1
AATCAAATATTATTTTTTATCATTCCCCTAAATT	0	208	1
GGCTCCGTTATTATTTTTAGCTTGCTCTAGTTTT	1	18	0
GATGACTGTGCCTTTGTTTTCATTGGTTTTAGTT	1	72	0
AAAGACATGCTTTTTGTCAGCATTCAGGAAACTC	1	120	0
CTTGCGGTCGTATTTTTCATCATTAAGCTTGCTA	1	159	0
TACCTTATGCTGGTTTTCGGCACTGTATTTACCA	1	273	0
CCGTTAATAGTGCTTTTTAGCAGTCAAATTTGAA	4	14	0
GCTATCCAACTTATTTTTAACTTTTAAAAATAAA	4	57	1
TTGAATATCCTGATTTTACTCAGGAAATTAAGTC	5	128	1
TTTTTTACTGTTATTGTCATCAGTATTTTGACCA	5	177	0
CTTTATAAGGCTGTTTTTGCCAGTAGTTGGGTTT	6	61	1
GTTGGGTTTTCTTTTGTTTGCTCTTGAGATCTAA	6	86	1
AATTAATGGCTTTTTGTATGCATTAATTAGATCT	6	112	0
CTTAAAAATATTTTTTTAAGATTTGCCATCTTTT	6	173	1
AGATTTGCCATCTTTTTTCGCTTGGGAAG     	6	191	1
          *  *****  ****
MAP Score: 11.1365

Motif 4
ATTTGTTTAAACTCAAAAAGGTCAATAATTTTTAA	0	73	1
AATTCAAAAACTAGAGCAAGCTAAAAATAATAACG	1	12	1
ATAACGGAGCCGAGAAAAAGGATAAGTCTGAAACT	1	41	1
ATGTCTTTGAAATTAGCAAGCTTAATGATGAAAAA	1	146	1
AATACAGTGCCGAAAACCAGCATAAGGTA      	1	278	1
AACTATAAAAAATAAAACTGGATAACCAAGCATGT	2	14	1
ACTCCCCAAAAGAAATTAAGCGCAAATTAACTATG	2	70	0
CAGCAACACTAGAAAGAAAGCCAAATCTTACAAAA	2	148	0
TACAAAACACCAAAAAGATGGGAAATTATACAGCA	4	104	0
ATTCGTTTGCCGATAAGAACGCTAAGCGCTTGAAG	5	71	1
GTCGCCAGACCAACAAAATGGTCAAAATACTGATG	5	159	1
GCGGGAAAGGAAAAAGTAAGGGTAAAGGCGGAAGC	5	266	1
CAAGAGCAAACAAAAGAAAACCCAACTACTGGCAA	6	77	0
TTCCCAAGCGAAAAAAGATGGCAAATCTTAAAAAA	6	184	0
          * * ** ****  **
MAP Score: 10.9034

Motif 5
TATGGTGCAGTTGCTTTTAGTGGCTTTTTAGGTCTAG	0	270	1
CATAGTTAATTTGCGCTTAATTTCTTTTGGGGAGTTA	2	70	1
AAGGCTGTTTTTGCCAGTAGTTGGGTTTTCTTTTGTT	6	67	1
TACAGCAATGGTGCAAATTCTTTATTTTTAAAAGTTA	4	74	0
TCTGATTTTTGGGCAATTAATGGCTTTTTGTATGCAT	6	123	0
TTAAAAATTATTGACCTTTTTGAGTTTAAACAAATGA	0	71	0
AACACCTTCGTTGAATATCCTGATTTTACTCAGGAAA	5	118	1
TAGAGATTAGTTGCTGGTATTTTTATTCACTTTGAAG	0	27	1
ACCGATGACTGTGCCTTTGTTTTCATTGGTTTTAGTT	1	72	0
ACCGGGTAGAGGGCGAGTTTTGCTGGTATGCTTAGCG	2	108	1
CATCAGTATTTTGACCATTTTGTTGGTCTGGCGACTT	5	157	0
      ATTACTGCTGCTTCCGCCTTTACCCTTACTT	5	279	0
TACAGTATTTCTTCCACTTCTGGCTTTAAGTATTCGT	5	40	1
TGCTGTATAATTTCCCATCTTTTTGGTGTTTTGTAAG	4	104	1
ACCCTTACTTTTTCCTTTCCCGCCTTTATTAGATTTC	5	252	0
          ****   *  **  ***
MAP Score: 6.22921

Motif 6
TTTGAAATTAGCAAGCTTAATGATGAAAAATA	1	151	1
AAATACGACCGCAAGATTATCGTTGGTGCTAC	1	178	1
CCAGGTGCTGGCAGGATAATTGCTTCCGCACT	1	244	0
AGTTTTGCTGGTATGCTTAGCGCGTTTTTGTA	2	123	1
CTGCTAAAAAGCACTATTAACGGATTATTGGA	4	25	1
AAGAAATACTGTAAGCTAATTGGTGAAACTTC	5	21	0
TTGCCGATAAGAACGCTAAGCGCTTGAAGTTT	5	77	1
          *** ***** **
MAP Score: 4.75338