AlignACE 3.0 10/20/99
AlignACE2 -i MT/MT_fusions021_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250605
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	argC	193	argC

Motif 1
CCCCCTTCGACTCGGCGCAGCTAGTGGACAT	0	16	1
TTCGAGTCCCATCGGCGCCGCCCGGCGGTGT	0	119	1
ATCGGCGCCGCCCGGCGGTGTGTCAAGTCCC	0	129	1
TGTGTCAAGTCCCGGCGCAGTCACCGCGGAA	0	147	1
          ******** **
MAP Score: 11.549

Motif 2
CACATGTCCACTAGCTGCGCCGAGTCGAAGGGGGAC	0	14	0
GCAACTTCGAGTCCCATCGGCGCCGCCCGGCGGTGT	0	114	1
GCCGGGACTTGACACACCGCCGGGCGGCGCCGATGG	0	127	0
TCATTCCGCGGTGACTGCGCCGGGACTTGACACACC	0	145	0
          **  *  ***** * *
MAP Score: 4.21151

Motif 3
GTCCACTAGCTGCGCCGAGTCGAAGGGGGA	0	15	0
AGTGGACATGTGTCACGGGAAATTCAGCCT	0	38	1
TTGGGTCTTATGTCATGTGAGGGAAAACGC	0	70	1
CCGCGGTGACTGCGCCGGGACTTGACACAC	0	146	0
          **********
MAP Score: 2.91526

Motif 4
AGTGGACATGTGTCACGGGAAATTCAGCCT	0	38	1
TCTTATGTCATGTGAGGGAAAACGCACGTT	0	75	1
CCGCGGTGACTGCGCCGGGACTTGACACAC	0	146	0
          **********
MAP Score: 1.01329

Motif 5
 GGCGGTCCCCCTTCGACTCGGCGCAGCTAGTGGACATGTG	0	9	1
AGCTAGTGGACATGTGTCACGGGAAATTCAGCCTAGTTGGG	0	34	1
TGGGTCTTATGTCATGTGAGGGAAAACGCACGTTTTCGCGG	0	71	1
GGGACTCGAAGTTGCGTCCGCGAAAACGTGCGTTTTCCCTC	0	88	0
GACACACCGCCGGGCGGCGCCGATGGGACTCGAAGTTGCGT	0	112	0
CCGGCGGTGTGTCAAGTCCCGGCGCAGTCACCGCGGAATGA	0	140	1
          *    * * ***   ** * *
MAP Score: 0.863413