AlignACE 3.0 10/20/99
AlignACE2 -i MT/MT_fusions021_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250607
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	argC	193	argC

Motif 1
GGACTTGACACACCGCCGGGCGGCGCCGATGG	0	127	0
TCCGCGGTGACTGCGCCGGGACTTGACACACC	0	145	0
TGTCCACTAGCTGCGCCGAGTCGAAGGGGGAC	0	14	0
CGCCGGGCGGCGCCGATGGGACTCGAAGTTGC	0	114	0
CCGGCGCAGTCACCGCGGAATGAGTTTGCAAA	0	158	1
CGCACGTTTTCGCGGACGCAACTTCGAGTCCC	0	97	1
          * ******** *
MAP Score: 10.7753

Motif 2
GTCCCCCTTCGACTCGGCGCAGCTAGTGGACA	0	14	1
GAAAACGTGCGTTTTCCCTCACATGACATAAG	0	76	0
GAAAACGCACGTTTTCGCGGACGCAACTTCGA	0	92	1
GCAACTTCGAGTCCCATCGGCGCCGCCCGGCG	0	114	1
GCCGGGACTTGACACACCGCCGGGCGGCGCCG	0	131	0
GGTGTGTCAAGTCCCGGCGCAGTCACCGCGGA	0	145	1
AGTTTGCAAACTCATTCCGCGGTGACTGCGCC	0	160	0
          ***** **** *
MAP Score: 5.31799

Motif 3
          GGCGGTCCCCCTTCGACTCGGCGCAGCTAGT	0	0	1
ACTCGGCGCAGCTAGTGGACATGTGTCACGGGAAATTCAGC	0	25	1
TATGTCATGTGAGGGAAAACGCACGTTTTCGCGGACGCAAC	0	78	1
GCGGACGCAACTTCGAGTCCCATCGGCGCCGCCCGGCGGTG	0	108	1
CCGCCCGGCGGTGTGTCAAGTCCCGGCGCAGTCACCGCGGA	0	136	1
          *   **  **   ** * * *
MAP Score: 2.27495