AlignACE 3.0 10/20/99
AlignACE2 -i MT/MT_fusions024_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250666
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	pntAA	300	pntAA
#1	ald	89	ald

Motif 1
     GCAAGTGGCAGCGCGAGCTCGACTATTCGCT	0	5	1
CGTACTGGAACCGCATCGCAATGCGGTTGTCGTGGA	0	61	0
AATCCCGTGACCGCAACGGCCAGTGGTATCGCAGCT	0	97	1
ATCGCAGCTACGGCACCGAACTGTGGCGAAGCCAGC	0	124	1
GCGAAGCCAGCATCAACGACGTGCCGATCGCCGAAT	0	149	1
GTGCCGATCGCCGAATCCGAGCGTCGCTACCTCGGT	0	169	1
GGTGCGCGCTCGGCATCCGAGTATGGCCAGGAAATA	0	202	1
TTTCTTCATACTGAAGCGTACAGTATCGAGAGGGGT	1	59	1
          * *** **    ****
MAP Score: 13.6962

Motif 2
   GCAAGTGGCAGCGCGAGCTCGACTATTCGCTA	0	7	1
GCAAGAGTTTGTGGAGCTTCCACGACAACCGCATT	0	43	1
CAACCGCATTGCGATGCGGTTCCAGTACGAATCCC	0	68	1
ATACCACTGGCCGTTGCGGTCACGGGATTCGTACT	0	91	0
ACCGCAACGGCCAGTGGTATCGCAGCTACGGCACC	0	106	1
CGGCACCGAACTGTGGCGAAGCCAGCATCAACGAC	0	134	1
CCGAATCCGAGCGTCGCTACCTCGGTGCGCGCTCG	0	179	1
ACCTCGGTGCGCGCTCGGCATCCGAGTATGGCCAG	0	197	1
AGGAAATACCGCTCTGGTAGCCCGGTAGGGTGTCT	0	230	1
          ***  ***  * ***
MAP Score: 10.3892

Motif 3
      GCAAGTGGCAGCGCGAGCTCGACTATTCGCTA	0	4	1
TCGCAATGCGGTTGTCGTGGAAGCTCCACAAACTCTTG	0	44	0
ACCGCATTGCGATGCGGTTCCAGTACGAATCCCGTGAC	0	70	1
TTCCAGTACGAATCCCGTGACCGCAACGGCCAGTGGTA	0	87	1
GGCCAGTGGTATCGCAGCTACGGCACCGAACTGTGGCG	0	114	1
GCACCGAACTGTGGCGAAGCCAGCATCAACGACGTGCC	0	136	1
GCCATACTCGGATGCCGAGCGCGCACCGAGGTAGCGAC	0	191	0
GCCAGGAAATACCGCTCTGGTAGCCCGGTAGGGTGTCT	0	227	1
          *  ** * *   ** ***
MAP Score: 9.56282

Motif 4
    GCAAGTGGCAGCGCGAGCTCGACTATTCGCTACGCA	0	6	1
CTCGACTATTCGCTACGCAAGAGTTTGTGGAGCTTCCACG	0	27	1
GTACTGGAACCGCATCGCAATGCGGTTGTCGTGGAAGCTC	0	56	0
GGTTCCAGTACGAATCCCGTGACCGCAACGGCCAGTGGTA	0	85	1
GCCACAGTTCGGTGCCGTAGCTGCGATACCACTGGCCGTT	0	111	0
CGTTGATGCTGGCTTCGCCACAGTTCGGTGCCGTAGCTGC	0	127	0
GAGGTAGCGACGCTCGGATTCGGCGATCGGCACGTCGTTG	0	162	0
ATGCCGAGCGCGCACCGAGGTAGCGACGCTCGGATTCGGC	0	178	0
CCTCGGTGCGCGCTCGGCATCCGAGTATGGCCAGGAAATA	0	198	1
ATCCGAGTATGGCCAGGAAATACCGCTCTGGTAGCCCGGT	0	216	1
ATACCGCTCTGGTAGCCCGGTAGGGTGTCTGAGCAAATCT	0	235	1
        ATGGCCTCGAAAAAGAATTATCATCAGCAATC	1	2	1
          ***  *** *  * *    *
MAP Score: 7.57059

Motif 5
   GCAAGTGGCAGCGCGAGCTCGACTATTCGCTACGCA	0	7	1
GCAAGAGTTTGTGGAGCTTCCACGACAACCGCATTGCGA	0	43	1
GCATTGCGATGCGGTTCCAGTACGAATCCCGTGACCGCA	0	73	1
ACGGCCAGTGGTATCGCAGCTACGGCACCGAACTGTGGC	0	112	1
CCGAGGTAGCGACGCTCGGATTCGGCGATCGGCACGTCG	0	165	0
CGTCGCTACCTCGGTGCGCGCTCGGCATCCGAGTATGGC	0	190	1
          *  * **   * ****  *
MAP Score: 5.51919

Motif 6
AAGTGGCAGCGCGAGCTCGACTATTCGCTACGCAAGAGTTTGT	0	12	1
AGTTTGTGGAGCTTCCACGACAACCGCATTGCGATGCGGTTCC	0	48	1
GAATCCCGTGACCGCAACGGCCAGTGGTATCGCAGCTACGGCA	0	96	1
TATCGCAGCTACGGCACCGAACTGTGGCGAAGCCAGCATCAAC	0	123	1
GGCGAAGCCAGCATCAACGACGTGCCGATCGCCGAATCCGAGC	0	148	1
AGCGCGCACCGAGGTAGCGACGCTCGGATTCGGCGATCGGCAC	0	169	0
CTACCTCGGTGCGCGCTCGGCATCCGAGTATGGCCAGGAAATA	0	195	1
          **     ****   ***     *
MAP Score: 3.8971

Motif 7
GGTTCCAGTACGAATCCCGTGACCGCAACGGCCAGTGGTATCG	0	85	1
ACGGCCAGTGGTATCGCAGCTACGGCACCGAACTGTGGCGAAG	0	112	1
CGAACTGTGGCGAAGCCAGCATCAACGACGTGCCGATCGCCGA	0	140	1
TCGCCGAATCCGAGCGTCGCTACCTCGGTGCGCGCTCGGCATC	0	176	1
TACCGCTCTGGTAGCCCGGTAGGGTGTCTGAGCAAATCTATCG	0	236	1
ATTATCATCAGCAATCTTGCAGATTAATCGAACTTTCTTCATA	1	26	1
          * *  ** **  *     **  *
MAP Score: 1.92251

Motif 8
CAAACTCTTGCGTAGCGAATAGTCGAGCTCGCGCTGCC	0	16	0
ATGCGGTTGTCGTGGAAGCTCCACAAACTCTTGCGTAG	0	39	0
GATTCGTACTGGAACCGCATCGCAATGCGGTTGTCGTG	0	63	0
TGTGGCGAAGCCAGCATCAACGACGTGCCGATCGCCGA	0	145	1
GAGGTAGCGACGCTCGGATTCGGCGATCGGCACGTCGT	0	164	0
TCGCTACCTCGGTGCGCGCTCGGCATCCGAGTATGGCC	0	192	1
CTACCAGAGCGGTATTTCCTGGCCATACTCGGATGCCG	0	212	0
GGGTGTCTGAGCAAATCTATCGGCGTTCAGTAAGGAAA	0	257	1
          ** *     *** *** *
MAP Score: 1.85549