AlignACE 3.0 10/20/99
AlignACE2 -i MT/MT_fusions024_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250673
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	pntAA	300	pntAA
#1	ald	89	ald

Motif 1
GGTTCCAGTACGAATCCCGTGACCGCAACGGCCAG	0	85	1
    GCAAGTGGCAGCGCGAGCTCGACTATTCGCT	0	6	1
ATACCGCTCTGGTAGCCCGGTAGGGTGTCTGAGCA	0	235	1
AACGGCCAGTGGTATCGCAGCTACGGCACCGAACT	0	111	1
GTACTGGAACCGCATCGCAATGCGGTTGTCGTGGA	0	61	0
TGCCGATCGCCGAATCCGAGCGTCGCTACCTCGGT	0	170	1
GTGCGCGCTCGGCATCCGAGTATGGCCAGGAAATA	0	203	1
CTCGGATTCGGCGATCGGCACGTCGTTGATGCTGG	0	155	0
GTTCAGTAAGGAAAGTGGATGTACGCGCC      	0	281	1
CTCGGATGCCGAGCGCGCACCGAGGTAGCGACGCT	0	188	0
          ** ******    **
MAP Score: 13.8509

Motif 2
     GCAAGTGGCAGCGCGAGCTCGACTATTCGCT	0	5	1
TCCACGACAACCGCATTGCGATGCGGTTCCAGTACG	0	61	1
AATCCCGTGACCGCAACGGCCAGTGGTATCGCAGCT	0	97	1
ATCGCAGCTACGGCACCGAACTGTGGCGAAGCCAGC	0	124	1
GCGAAGCCAGCATCAACGACGTGCCGATCGCCGAAT	0	149	1
GTGCCGATCGCCGAATCCGAGCGTCGCTACCTCGGT	0	169	1
AGCGTCGCTACCTCGGTGCGCGCTCGGCATCCGAGT	0	188	1
GGTGCGCGCTCGGCATCCGAGTATGGCCAGGAAATA	0	202	1
CCAGGAAATACCGCTCTGGTAGCCCGGTAGGGTGTC	0	228	1
          * *** **    ****
MAP Score: 12.2641

Motif 3
     GCAAGTGGCAGCGCGAGCTCGACTATTCG	0	5	1
GCTCGACTATTCGCTACGCAAGAGTTTGTGGAGC	0	26	1
GGAGCTTCCACGACAACCGCATTGCGATGCGGTT	0	55	1
GGGATTCGTACTGGAACCGCATCGCAATGCGGTT	0	69	0
CTGGCCGTTGCGGTCACGGGATTCGTACTGGAAC	0	86	0
AGTGGTATCGCAGCTACGGCACCGAACTGTGGCG	0	118	1
TCGTTGATGCTGGCTTCGCCACAGTTCGGTGCCG	0	134	0
GATTCGGCGATCGGCACGTCGTTGATGCTGGCTT	0	152	0
AATCCGAGCGTCGCTACCTCGGTGCGCGCTCGGC	0	182	1
GGTGCGCGCTCGGCATCCGAGTATGGCCAGGAAA	0	202	1
ACACCCTACCGGGCTACCAGAGCGGTATTTCCTG	0	229	0
         ATGGCCTCGAAAAAGAATTATCATC	1	1	1
CTGAAGCGTACAGTATCGAGAGGGGTAATC    	1	69	1
          **** *** **  *
MAP Score: 9.02748

Motif 4
GCAAGTGGCAGCGCGAGCTCGACTATTCGCTACGCAAGAG	0	10	1
TACTGGAACCGCATCGCAATGCGGTTGTCGTGGAAGCTCC	0	55	0
TCCCGTGACCGCAACGGCCAGTGGTATCGCAGCTACGGCA	0	99	1
CGCAGCTACGGCACCGAACTGTGGCGAAGCCAGCATCAAC	0	126	1
GAAGCCAGCATCAACGACGTGCCGATCGCCGAATCCGAGC	0	151	1
CCGAATCCGAGCGTCGCTACCTCGGTGCGCGCTCGGCATC	0	179	1
TCCGAGTATGGCCAGGAAATACCGCTCTGGTAGCCCGGTA	0	217	1
CGCTCTGGTAGCCCGGTAGGGTGTCTGAGCAAATCTATCG	0	239	1
          **  **    * ** *  **
MAP Score: 7.54757

Motif 5
  GCAAGTGGCAGCGCGAGCTCGACTATTCGCT	0	8	1
TACCACTGGCCGTTGCGGTCACGGGATTCGTAC	0	92	0
CGAACTGTGGCGAAGCCAGCATCAACGACGTGC	0	140	1
GCATCAACGACGTGCCGATCGCCGAATCCGAGC	0	158	1
GCCGATCGCCGAATCCGAGCGTCGCTACCTCGG	0	171	1
GCCATACTCGGATGCCGAGCGCGCACCGAGGTA	0	196	0
CAGGAAATACCGCTCTGGTAGCCCGGTAGGGTG	0	229	1
          **  ****** **
MAP Score: 1.87731

Motif 6
GCAGCGCGAGCTCGACTATTCGCTACGCAAGAGTTT	0	17	1
AACCGCATCGCAATGCGGTTGTCGTGGAAGCTCCAC	0	53	0
AACCGCATTGCGATGCGGTTCCAGTACGAATCCCGT	0	69	1
CTGCGATACCACTGGCCGTTGCGGTCACGGGATTCG	0	95	0
CGCCACAGTTCGGTGCCGTAGCTGCGATACCACTGG	0	116	0
CGGCACCGAACTGTGGCGAAGCCAGCATCAACGACG	0	134	1
AGCATCAACGACGTGCCGATCGCCGAATCCGAGCGT	0	157	1
ATCCGAGCGTCGCTACCTCGGTGCGCGCTCGGCATC	0	183	1
GGCCATACTCGGATGCCGAGCGCGCACCGAGGTAGC	0	194	0
AGCGGTATTTCCTGGCCATACTCGGATGCCGAGCGC	0	207	0
TATGGCCAGGAAATACCGCTCTGGTAGCCCGGTAGG	0	223	1
TGCTCAGACACCCTACCGGGCTACCAGAGCGGTATT	0	234	0
CATCCACTTTCCTTACTGAACGCCGATAGATTTGCT	0	266	0
TTACCCCTCTCGATACTGTACGCTTCAGTATGAAGA	1	61	0
          *  *****  ***  *
MAP Score: 1.63362