AlignACE 3.0 10/20/99
AlignACE2 -i MT/MT_fusions026_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250723
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	rocA	84	rocA
#1	gabD1	300	gabD1
#2	Rv3292	30	hypothetical protein Rv3292
#3	aldB	26	aldB

Motif 1
AATCCCCTGGCTGGAGGATCCCGTTCAGCCAGGGCGTAGGCGC	1	119	1
     GCCTGCCAGCATCCCCGCCCAGGCATCGCAAATGTTTG	0	56	0
TAACATGAACATCGCGAGGCCGGTTCTTCGTGGTAACGTGCCG	1	11	1
GCCACCTGAACAAGAAGAACCCGGCATTCGTCGAGAATGCCTT	1	200	1
ATACTCTGTGCCCTAGACACCCGCATTTCTTCGAAAGAGGTGA	1	263	1
TGGGGCGTCGCGAGAGATTCGGCAATCCCCTGGCTGGAGGATC	1	96	1
GGCGCAACCAAATTCGCTTCCGGCAGTCCCTTGGGATCCCGGC	1	50	0
TCCGATCCTACTAGCAAGTCCGCCAGATCTTGTCTGATCGGCC	0	14	1
CTTTGGTCACCAATCGCAGGCCGATACTCTGTGCCCTAGACAC	1	240	1
TGCGGCGTGCACGGCTTGGCCCCACAACCCGTATTGATGCCAC	1	162	1
          *  ***   ****     *   *
MAP Score: 15.9657

Motif 2
GTCTGATCGGCCAAACATTTGCGATGCCTGGGCGGGGATG	0	45	1
      CTAACATGAACATCGCGAGGCCGGTTCTTCGTGG	1	4	1
TTCGCTTCCGGCAGTCCCTTGGGATCCCGGCACGTTACCA	1	41	0
GAATTTGGTTGCGCCGCTTGGGGCGTCGCGAGAGATTCGG	1	78	1
GAACGGGATCCTCCAGCCAGGGGATTGCCGAATCTCTCGC	1	105	0
GTGCACGCCGCAGCGCCTACGCCCTGGCTGAACGGGATCC	1	134	0
ATTGATGCCACCTGAACAAGAAGAACCCGGCATTCGTCGA	1	194	1
GCCTGCGATTGGTGACCAAAGGCATTCTCGACGAATGCCG	1	221	0
  ATCGTCACCTCTTTCGAAGAAATGCGGGTGTCTAGGGC	1	272	0
 GGCCGGAGACTATCGCAACGGCAGTGCCGC         	2	9	1
    TAACCACTGACGCGTTACGAGCCCAG          	3	6	1
          *     * * ****  ** *
MAP Score: 14.7463

Motif 3
ATCGGCCAAACATTTGCGATGCCTGGGCGGGGATGCTGGC	0	50	1
      CTAACATGAACATCGCGAGGCCGGTTCTTCGTGG	1	4	1
GAGGCCGGTTCTTCGTGGTAACGTGCCGGGATCCCAAGGG	1	26	1
TGCCGGGATCCCAAGGGACTGCCGGAAGCGAATTTGGTTG	1	49	1
GAAGCGAATTTGGTTGCGCCGCTTGGGGCGTCGCGAGAGA	1	73	1
GAACGGGATCCTCCAGCCAGGGGATTGCCGAATCTCTCGC	1	105	0
CGCCGCAGCGCCTACGCCCTGGCTGAACGGGATCCTCCAG	1	129	0
GGGTTGTGGGGCCAAGCCGTGCACGCCGCAGCGCCTACGC	1	152	0
TGACCAAAGGCATTCTCGACGAATGCCGGGTTCTTCTTGT	1	209	0
  ATCGTCACCTCTTTCGAAGAAATGCGGGTGTCTAGGGC	1	272	0
 GGCCGGAGACTATCGCAACGGCAGTGCCGC         	2	9	1
    TAACCACTGACGCGTTACGAGCCCAG          	3	6	1
          *    ***  **  *  ***
MAP Score: 14.1519

Motif 4
ACATCGCGAGGCCGGTTCTTCGTGGTAACGTGCCGGGAT	1	19	1
ATCCCGTTCAGCCAGGGCGTAGGCGCTGCGGCGTGCACG	1	136	1
CATTTGCGATGCCTGGGCGGGGATGCTGGCAGGC     	0	60	1
AGGCGCTGCGGCGTGCACGGCTTGGCCCCACAACCCGTA	1	156	1
ATTCGCTTCCGGCAGTCCCTTGGGATCCCGGCACGTTAC	1	43	0
TAGCAAGTCCGCCAGATCTTGTCTGATCGGCCAAACATT	0	25	1
         GGCCGGAGACTATCGCAACGGCAGTGCCGC	2	1	1
TCGAAGAAATGCGGGTGTCTAGGGCACAGAGTATCGGCC	1	258	0
CAGAGTATCGGCCTGCGATTGGTGACCAAAGGCATTCTC	1	232	0
TTGGGGCGTCGCGAGAGATTCGGCAATCCCCTGGCTGGA	1	95	1
AAGCGAATTTGGTTGCGCCGCTTGGGGCGTCGCGAGAGA	1	74	1
      CTGGGCTCGTAACGCGTCAGTGGTTA       	3	3	0
AACAAGAAGAACCCGGCATTCGTCGAGAATGCCTTTGGT	1	208	1
          *** *  * * * **   *
MAP Score: 12.7174

Motif 5
CAAACATTTGCGATGCCTGGGCGGGGATGCTGGC	0	56	1
CTAACATGAACATCGCGAGGCCGGTTCTTCGTGG	1	10	1
AATTCGCTTCCGGCAGTCCCTTGGGATCCCGGCA	1	49	0
TCTCTCGCGACGCCCCAAGCGGCGCAACCAAATT	1	79	0
GCGAGAGATTCGGCAATCCCCTGGCTGGAGGATC	1	105	1
CACGCCGCAGCGCCTACGCCCTGGCTGAACGGGA	1	137	0
GGGGCCAAGCCGTGCACGCCGCAGCGCCTACGCC	1	151	0
AAGGCATTCTCGACGAATGCCGGGTTCTTCTTGT	1	209	0
        ATCGTCACCTCTTTCGAAGAAATGCG	1	284	0
         GCGGCACTGCCGTTGCGATAGTCTC	2	15	0
ACCACTGACGCGTTACGAGCCCAG          	3	12	1
          ** * *  ******
MAP Score: 10.7749

Motif 6
TAGCAAGTCCGCCAGATCTTGTCTGATCGGCCAAACATT	0	25	1
CATTTGCGATGCCTGGGCGGGGATGCTGGCAGGC     	0	60	1
CATGAACATCGCGAGGCCGGTTCTTCGTGGTAACGTGCC	1	14	1
CTTCGTGGTAACGTGCCGGGATCCCAAGGGACTGCCGGA	1	36	1
GGACTGCCGGAAGCGAATTTGGTTGCGCCGCTTGGGGCG	1	64	1
TGGTTGCGCCGCTTGGGGCGTCGCGAGAGATTCGGCAAT	1	83	1
TTCGGCAATCCCCTGGCTGGAGGATCCCGTTCAGCCAGG	1	113	1
ATCCCGTTCAGCCAGGGCGTAGGCGCTGCGGCGTGCACG	1	136	1
AGGCGCTGCGGCGTGCACGGCTTGGCCCCACAACCCGTA	1	156	1
GAGTATCGGCCTGCGATTGGTGACCAAAGGCATTCTCGA	1	230	0
TCGAAGAAATGCGGGTGTCTAGGGCACAGAGTATCGGCC	1	258	0
         GGCCGGAGACTATCGCAACGGCAGTGCCGC	2	1	1
      TAACCACTGACGCGTTACGAGCCCAG       	3	4	1
          *** *   ** *  **  *
MAP Score: 4.43761

Motif 7
AAACATTTGCGATGCCTGGGCGGGGATGCTGGCAG	0	57	1
TAACATGAACATCGCGAGGCCGGTTCTTCGTGGTA	1	11	1
TCTTCGTGGTAACGTGCCGGGATCCCAAGGGACTG	1	35	1
GGATCCCAAGGGACTGCCGGAAGCGAATTTGGTTG	1	54	1
AGCGAATTTGGTTGCGCCGCTTGGGGCGTCGCGAG	1	75	1
CGCTTGGGGCGTCGCGAGAGATTCGGCAATCCCCT	1	92	1
AGATTCGGCAATCCCCTGGCTGGAGGATCCCGTTC	1	110	1
GTTCAGCCAGGGCGTAGGCGCTGCGGCGTGCACGG	1	141	1
GGCGCTGCGGCGTGCACGGCTTGGCCCCACAACCC	1	157	1
TTGGTCACCAATCGCAGGCCGATACTCTGTGCCCT	1	242	1
GCCGGAGACTATCGCAACGGCAGTGCCGC      	2	11	1
CTGGGCTCGTAACGCGTCAGTGGTTA         	3	1	0
          * **** ***  * *
MAP Score: 1.73745

Motif 8
AGCAAGTCCGCCAGATCTTGTCTGATCGGCCAAACATTTG	0	26	1
ACATTTGCGATGCCTGGGCGGGGATGCTGGCAGGC     	0	59	1
      CTAACATGAACATCGCGAGGCCGGTTCTTCGTGG	1	4	1
TCGCTTCCGGCAGTCCCTTGGGATCCCGGCACGTTACCAC	1	40	0
GACTGCCGGAAGCGAATTTGGTTGCGCCGCTTGGGGCGTC	1	65	1
CGCCGCTTGGGGCGTCGCGAGAGATTCGGCAATCCCCTGG	1	89	1
ATTCGGCAATCCCCTGGCTGGAGGATCCCGTTCAGCCAGG	1	112	1
CCCGTTCAGCCAGGGCGTAGGCGCTGCGGCGTGCACGGCT	1	138	1
GGCATCAATACGGGTTGTGGGGCCAAGCCGTGCACGCCGC	1	163	0
ATTGATGCCACCTGAACAAGAAGAACCCGGCATTCGTCGA	1	194	1
ATGCGGGTGTCTAGGGCACAGAGTATCGGCCTGCGATTGG	1	249	0
        GGCCGGAGACTATCGCAACGGCAGTGCCGC  	2	2	1
          *  *  *  ** *   ****
MAP Score: 1.59623