AlignACE 3.0 10/20/99 AlignACE2 -i MT/MT_fusions031_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944250915 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 Rv1042c 281 hypothetical protein Rv1042c #1 Rv1149 144 hypothetical protein Rv1149 Motif 1 GGCATTTGGTGGCGGCAGTCGCTATGGCGCGGCTGTTTTCGCT 1 10 0 GCTGTGTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGCTAGGA 0 104 1 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 256 1 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 119 1 GCCGTGGATAGGGATTGCTGACGCTGGCGTGTCTGCGTGCACG 1 54 0 GGCTAGGCAAGGCTAGGAATGGCTTGGCGTGGCAAGGCAAGGT 0 129 1 GGGCTGCAGCGGTAGTACTTTGGCCTGTTCGGCGCATCTCCTA 0 194 0 TACTACCGCTGCAGCCCGCGCCTAGGGCGTGTCTCCCAAATTT 0 220 1 TTTGAGCCAGCGGGCCGCAGCCATAGGAGATGCGCCGAACAGG 0 171 1 GACACAGCGAGCCTACGCCGCGTCGAGTTCGGCGAAAATCAAA 0 69 0 TCCCTATCCACGGCTGCAGTACTAGGGCGTGTCTCCCAAATTT 1 83 1 CCACTACCACCGGATTGAAGGGTTTGGTGCGTGTTGATACGTC 0 21 0 ** * * ** * *** MAP Score: 30.9643 Motif 2 CTGACCCACTACCACCGGATTGAAGGGTTTGGTGCGTGTTGA 0 27 0 GACACAGCGAGCCTACGCCGCGTCGAGTTCGGCGAAAATCAA 0 70 0 GCGTAGGCTCGCTGTGTCTAGGCAGGGCATGGTGTGGCTAGG 0 94 1 GGCATGGTGTGGCTAGGCAAGGCTAGGAATGGCTTGGCGTGG 0 119 1 GGAATGGCTTGGCGTGGCAAGGCAAGGTTTGAGCCAGCGGGC 0 144 1 CAAGGTTTGAGCCAGCGGGCCGCAGCCATAGGAGATGCGCCG 0 166 1 GACACGCCCTAGGCGCGGGCTGCAGCGGTAGTACTTTGGCCT 0 211 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 256 1 GGCGGCAGTCGCTATGGCGCGGCTGTTTTCGCT 1 1 0 GTGTCTGCGTGCACGCGGCATTTGGTGGCGGCAGTCGCTATG 1 27 0 CTGCAGCCGTGGATAGGGATTGCTGACGCTGGCGTGTCTGCG 1 60 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 119 1 ** ** ** * * ** MAP Score: 29.3807 Motif 3 TTTCGCCGAACTCGACGCGGCGTAGGCTCGCTGTGTCTAGG 0 75 1 CTCGCTGTGTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGC 0 101 1 TGTGGCTAGGCAAGGCTAGGAATGGCTTGGCGTGGCAAGGC 0 126 1 CTTGGCGTGGCAAGGCAAGGTTTGAGCCAGCGGGCCGCAGC 0 151 1 CCAGCGGGCCGCAGCCATAGGAGATGCGCCGAACAGGCCAA 0 177 1 CGCTGCAGCCCGCGCCTAGGGCGTGTCTCCCAAATTTTTAG 0 226 1 TTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 260 1 CGAAAACAGCCGCGCCATAGCGACTGCCGCCACCAAATGCC 1 12 1 TGCACGCAGACACGCCAGCGTCAGCAATCCCTATCCACGGC 1 56 1 ATTTGGGAGACACGCCCTAGTACTGCAGCCGTGGATAGGGA 1 83 0 TTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 123 1 * *** ** **** MAP Score: 23.6595 Motif 4 GTCAGTTTGATTTTCGCCGAACTCGACGCGGCGTAGGCTCG 0 64 1 CGCGGCGTAGGCTCGCTGTGTCTAGGCAGGGCATGGTGTGG 0 90 1 GCAGGGCATGGTGTGGCTAGGCAAGGCTAGGAATGGCTTGG 0 115 1 GCTAGGAATGGCTTGGCGTGGCAAGGCAAGGTTTGAGCCAG 0 140 1 AGCCATAGGAGATGCGCCGAACAGGCCAAAGTACTACCGCT 0 189 1 TAAAAATTTGGGAGACACGCCCTAGGCGCGGGCTGCAGCGG 0 225 0 AAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 257 1 AGCGAAAACAGCCGCGCCATAGCGACTGCCGC 1 1 1 CAAATGCCGCGTGCACGCAGACACGCCAGCGTCAGCAATCC 1 45 1 AGTACCTAAAAATTTGGGAGACACGCCCTAGTACTGCAGCC 1 94 0 AAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 120 1 * * * * * *** ** MAP Score: 22.4811 Motif 5 AGCGAGCCTACGCCGCGTCGAGTTCGGCGAAAATCAAA 0 69 0 ACGCGGCGTAGGCTCGCTGTGTCTAGGCAGGGCATGGT 0 89 1 GTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGCTAGGA 0 109 1 GGCTAGGCAAGGCTAGGAATGGCTTGGCGTGGCAAGGC 0 129 1 GGCTGCGGCCCGCTGGCTCAAACCTTGCCTTGCCACGC 0 155 0 GTACTACCGCTGCAGCCCGCGCCTAGGGCGTGTCTCCC 0 219 1 TTTAGGTACTGGCCAGCGAGGATTGGCCG 0 262 1 GACGCTGGCGTGTCTGCGTGCACGCGGCATTTGGTGGC 1 40 0 CACGCAGACACGCCAGCGTCAGCAATCCCTATCCACGG 1 58 1 TCCCTATCCACGGCTGCAGTACTAGGGCGTGTCTCCCA 1 83 1 TTTAGGTACTGGCCAGCGAGGATTGGCCG 1 125 1 *** ** * * *** MAP Score: 21.8375 Motif 6 GGTCAGTTTGATTTTCGCCGAACTCGACGCGGCGTAGGCTCGC 0 63 1 ACTCGACGCGGCGTAGGCTCGCTGTGTCTAGGCAGGGCATGGT 0 84 1 GCTGTGTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGCTAGGA 0 104 1 GGTGTGGCTAGGCAAGGCTAGGAATGGCTTGGCGTGGCAAGGC 0 124 1 GGCTTGGCGTGGCAAGGCAAGGTTTGAGCCAGCGGGCCGCAGC 0 149 1 GGGCCGCAGCCATAGGAGATGCGCCGAACAGGCCAAAGTACTA 0 182 1 GGGAGACACGCCCTAGGCGCGGGCTGCAGCGGTAGTACTTTGG 0 214 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 256 1 TGGCGTGTCTGCGTGCACGCGGCATTTGGTGGCGGCAGTCGCT 1 30 0 CGCCCTAGTACTGCAGCCGTGGATAGGGATTGCTGACGCTGGC 1 69 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 119 1 * *** ** * *** MAP Score: 19.9409 Motif 7 GCACAACCCGGGACGTATCAACACGCACC 0 3 1 CACCGGATTGAAGGGTTTGGTGCGTGTTGATACGTC 0 21 0 TTGATTTTCGCCGAACTCGACGCGGCGTAGGCTCGC 0 70 1 TCGACGCGGCGTAGGCTCGCTGTGTCTAGGCAGGGC 0 86 1 CTTGCCTAGCCACACCATGCCCTGCCTAGACACAGC 0 104 0 TGTGTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGC 0 106 1 CACGCCAAGCCATTCCTAGCCTTGCCTAGCCACACC 0 124 0 CTAGGCAAGGCTAGGAATGGCTTGGCGTGGCAAGGC 0 131 1 CCCGCTGGCTCAAACCTTGCCTTGCCACGCCAAGCC 0 149 0 CAAGGTTTGAGCCAGCGGGCCGCAGCCATAGGAGAT 0 166 1 TAGTACTTTGGCCTGTTCGGCGCATCTCCTATGGCT 0 189 0 ACAGGCCAAAGTACTACCGCTGCAGCCCGCGCCTAG 0 209 1 ACTACCGCTGCAGCCCGCGCCTAGGGCGTGTCTCCC 0 221 1 AGCGAAAACAGCCGCGCCATAGCGACTG 1 2 1 ACGCGGCATTTGGTGGCGGCAGTCGCTATGGCGCGG 1 21 0 CGACTGCCGCCACCAAATGCCGCGTGCACGCAGACA 1 32 1 ATAGGGATTGCTGACGCTGGCGTGTCTGCGTGCACG 1 54 0 CCACGGCTGCAGTACTAGGGCGTGTCTCCCAAATTT 1 90 1 TTAGGTACTGGCCAGCGAGGATTGGCCG 1 126 1 * * ******** MAP Score: 18.8365 Motif 8 CACAACCCGGGACGTATCAACACGCACCAAACCCTTCAATCCG 0 11 1 ACACAGCGAGCCTACGCCGCGTCGAGTTCGGCGAAAATCAAAC 0 68 0 GCCTTGCCTAGCCACACCATGCCCTGCCTAGACACAGCGAGCC 0 99 0 GCCTTGCCACGCCAAGCCATTCCTAGCCTTGCCTAGCCACACC 0 124 0 GCTGCGGCCCGCTGGCTCAAACCTTGCCTTGCCACGCCAAGCC 0 149 0 GAGCCAGCGGGCCGCAGCCATAGGAGATGCGCCGAACAGGCCA 0 174 1 CTAGGCGCGGGCTGCAGCGGTAGTACTTTGGCCTGTTCGGCGC 0 202 0 CGGCCAATCCTCGCTGGCCAGTACCTAAAAATTTG 0 256 0 AGCGAAAACAGCCGCGCCATAGCGACTGCCGCCA 1 1 1 CATAGCGACTGCCGCCACCAAATGCCGCGTGCACGCAGACACG 1 27 1 ACGCAGACACGCCAGCGTCAGCAATCCCTATCCACGGCTGCAG 1 59 1 CGGCCAATCCTCGCTGGCCAGTACCTAAAAATTTG 1 119 0 **** * * * *** MAP Score: 17.6689 Motif 9 AACTCGACGCGGCGTAGGCTCGCTGTGTCTAGGCAGGGCATGGT 0 83 1 GGCTCGCTGTGTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGCT 0 99 1 GGCATGGTGTGGCTAGGCAAGGCTAGGAATGGCTTGGCGTGGCA 0 119 1 GGCTAGGAATGGCTTGGCGTGGCAAGGCAAGGTTTGAGCCAGCG 0 139 1 GGCAAGGCAAGGTTTGAGCCAGCGGGCCGCAGCCATAGGAGATG 0 159 1 CGGGCCGCAGCCATAGGAGATGCGCCGAACAGGCCAAAGTACTA 0 181 1 TGGGAGACACGCCCTAGGCGCGGGCTGCAGCGGTAGTACTTTGG 0 214 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 256 1 CGGCATTTGGTGGCGGCAGTCGCTATGGCGCGGCTGTTTTCGCT 1 10 0 AGCCGCGCCATAGCGACTGCCGCCACCAAATGCCGCGTGCACGC 1 19 1 ATGCCGCGTGCACGCAGACACGCCAGCGTCAGCAATCCCTATCC 1 48 1 CAGCAATCCCTATCCACGGCTGCAGTACTAGGGCGTGTCTCCCA 1 77 1 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 119 1 * * * ** ** *** MAP Score: 17.6371 Motif 10 TGCCTAGACACAGCGAGCCTACGCCGCGTCGAGTTC 0 82 0 TAGCCTTGCCTAGCCACACCATGCCCTGCCTAGACA 0 108 0 AGGCTAGGAATGGCTTGGCGTGGCAAGGCAAGGTTT 0 138 1 AGGTTTGAGCCAGCGGGCCGCAGCCATAGGAGATGC 0 168 1 GCCATAGGAGATGCGCCGAACAGGCCAAAGTACTAC 0 190 1 CAAAGTACTACCGCTGCAGCCCGCGCCTAGGGCGTG 0 215 1 AGGTACTGGCCAGCGAGGATTGGCCG 0 265 1 AGCGAAAACAGCCGCGCCATAGCGACTGCCGCCA 1 8 1 ATAGCGACTGCCGCCACCAAATGCCGCGTGCACGCA 1 28 1 GCACGCAGACACGCCAGCGTCAGCAATCCCTATCCA 1 57 1 CCTAGTACTGCAGCCGTGGATAGGGATTGCTGACGC 1 73 0 AGGTACTGGCCAGCGAGGATTGGCCG 1 128 1 * *** ** **** MAP Score: 15.9149 Motif 11 CCCTGCCTAGACACAGCGAGCCTACGCCGCGTCGAGTTCGGCG 0 78 0 TCCTAGCCTTGCCTAGCCACACCATGCCCTGCCTAGACACAGC 0 104 0 ACCTTGCCTTGCCACGCCAAGCCATTCCTAGCCTTGCCTAGCC 0 129 0 GCAAGGCAAGGTTTGAGCCAGCGGGCCGCAGCCATAGGAGATG 0 160 1 AGCCATAGGAGATGCGCCGAACAGGCCAAAGTACTACCGCTGC 0 189 1 TACTACCGCTGCAGCCCGCGCCTAGGGCGTGTCTCCCAAATTT 0 220 1 AAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 257 1 AGCGAAAACAGCCGCGCCATAGCGACTGCCGCCACCAAATGCC 1 10 1 CAAATGCCGCGTGCACGCAGACACGCCAGCGTCAGCAATCCCT 1 45 1 AAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 120 1 ** *** * * *** MAP Score: 15.2882 Motif 12 GCACAACCCGGGACGTATCAACACGCACCAAACCCTTCA 0 7 1 TTTGATTTTCGCCGAACTCGACGCGGCGTAGGCTCGCTGTGT 0 69 1 CCATGCCCTGCCTAGACACAGCGAGCCTACGCCGCGTCGAGT 0 84 0 CCTAGCCTTGCCTAGCCACACCATGCCCTGCCTAGACACAGC 0 104 0 CCTTGCCACGCCAAGCCATTCCTAGCCTTGCCTAGCCACACC 0 124 0 GCCCGCTGGCTCAAACCTTGCCTTGCCACGCCAAGCCATTCC 0 144 0 CAAGGTTTGAGCCAGCGGGCCGCAGCCATAGGAGATGCGCCG 0 166 1 GCGGTAGTACTTTGGCCTGTTCGGCGCATCTCCTATGGCTGC 0 187 0 GAGACACGCCCTAGGCGCGGGCTGCAGCGGTAGTACTTTGGC 0 213 0 CGGCCAATCCTCGCTGGCCAGTACCTAAAAATTT 0 257 0 GCGAAAACAGCCGCGCCATAGCGACTGCCGCCACCAAATGCC 1 11 1 GTGTCTGCGTGCACGCGGCATTTGGTGGCGGCAGTCGCTATG 1 27 0 GATAGGGATTGCTGACGCTGGCGTGTCTGCGTGCACGCGGCA 1 49 0 CGGCCAATCCTCGCTGGCCAGTACCTAAAAATTT 1 120 0 ** **** * * * * MAP Score: 12.8864 Motif 13 CCACCGGATTGAAGGGTTTGGTGCGTGTTGAT 0 26 0 TTTTCGCCGAACTCGACGCGGCGTAGGCTCGC 0 74 1 CTCGACGCGGCGTAGGCTCGCTGTGTCTAGGC 0 85 1 GCTCGCTGTGTCTAGGCAGGGCATGGTGTGGC 0 100 1 TCTAGGCAGGGCATGGTGTGGCTAGGCAAGGC 0 110 1 GTGTGGCTAGGCAAGGCTAGGAATGGCTTGGC 0 125 1 GCAAGGCTAGGAATGGCTTGGCGTGGCAAGGC 0 135 1 GAATGGCTTGGCGTGGCAAGGCAAGGTTTGAG 0 145 1 GTAGTACTTTGGCCTGTTCGGCGCATCTCCTA 0 194 0 CCTAGGCGCGGGCTGCAGCGGTAGTACTTTGG 0 214 0 GGAGACACGCCCTAGGCGCGGGCTGCAGCGGT 0 224 0 CTAAAAATTTGGGAGACACGCCCTAGGCGCGG 0 235 0 GTACTGGCCAGCGAGGATTGGCCG 0 267 1 GCGGCAGTCGCTATGGCGCGGCTGTTTTCGCT 1 10 0 CGGCATTTGGTGGCGGCAGTCGCTATGGCGCG 1 22 0 CTGGCGTGTCTGCGTGCACGCGGCATTTGGTG 1 42 0 GGATTGCTGACGCTGGCGTGTCTGCGTGCACG 1 54 0 AGTACTGCAGCCGTGGATAGGGATTGCTGACG 1 74 0 CTAAAAATTTGGGAGACACGCCCTAGTACTGC 1 98 0 GTACTGGCCAGCGAGGATTGGCCG 1 130 1 *** **** *** MAP Score: 11.1401 Motif 14 CACAACCCGGGACGTATCAACACGCACCAAACCCTTCAATCCGG 0 11 1 GTTTGATTTTCGCCGAACTCGACGCGGCGTAGGCTCGCTGTGTC 0 68 1 ACCATGCCCTGCCTAGACACAGCGAGCCTACGCCGCGTCGAGTT 0 83 0 GTCTAGGCAGGGCATGGTGTGGCTAGGCAAGGCTAGGAATGGCT 0 109 1 GCCTTGCCACGCCAAGCCATTCCTAGCCTTGCCTAGCCACACCA 0 123 0 GCGTGGCAAGGCAAGGTTTGAGCCAGCGGGCCGCAGCCATAGGA 0 155 1 CGGGCCGCAGCCATAGGAGATGCGCCGAACAGGCCAAAGTACTA 0 181 1 GGCGCGGGCTGCAGCGGTAGTACTTTGGCCTGTTCGGCGCATCT 0 198 0 CTAAAAATTTGGGAGACACGCCCTAGGCGCGGGCTGCAGCGGTA 0 223 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 0 256 1 AGCGAAAACAGCCGCGCCATAGCGACTGCCGCCA 1 0 1 ATTGCTGACGCTGGCGTGTCTGCGTGCACGCGGCATTTGGTGGC 1 40 0 TAGTACTGCAGCCGTGGATAGGGATTGCTGACGCTGGCGTGTCT 1 63 0 AAATTTGGGAGACACGCCCTAGTACTGCAGCCGTGGATAGGGAT 1 82 0 CAAATTTTTAGGTACTGGCCAGCGAGGATTGGCCG 1 119 1 * * ** *** *** MAP Score: 2.08232