AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_fusions013_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248720
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB1474	28	PAB1474
#1	PAB1471	28	PAB1471
#2	PAB1470	226	PAB1470

Motif 1
        TTTATTAATTATTTTGGGGTGGTGTGAT     	0	2	1
      TTCTTCTTAACTTTTTGGAGGGATATCC       	1	4	1
CTTGAGTTTATCTTCATCCATTTAGGCCCTATTATCTTTAT	2	20	1
CTATTATCTTTATAAAAGACTTTCGGTGAAAGTATAATGCG	2	48	1
GCGTTACGACAATTGTCAAATTTTGGCATTACCTATGACAA	2	106	0
ACATAAATCAAATTCAAAAATTCAAGATTGAACTCGGATTA	2	169	1
AACTCGGATTAATTGAAAGCTTAAGGGGGCAGAAAAG    	2	199	1
          **** *    **  **    *
MAP Score: 5.98985

Motif 2
       TTTATTAATTATTTTGGGGTGGTG	0	3	1
     TTCTTCTTAACTTTTTGGAGGGATAT	1	5	1
TACTCATCACCTTGAGTTTATCTTCATCCAT	2	10	1
TTTAGGCCCTATTATCTTTATAAAAGACTTT	2	40	1
TCGATAACGCATTATACTTTCACCGAAAGTC	2	65	0
CGAGTTCAATCTTGAATTTTTGAATTTGATT	2	174	0
TTTCTGCCCCCTTAAGCTTTCAATTAATCCG	2	203	0
          ***** *****
MAP Score: 4.537