AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_fusions014_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248731
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB3055	115	hypothetical protein
#1	PAB1655	62	PAB1655
#2	mgtE-like	133	PAB0883
#3	PAB1305	61	PAB1305

Motif 1
ATCAACTAGCTTAAAAGTCTTGGGCCGATCT	0	67	0
TTAAGCTAGTTGATGAACCATACTTAAGGAG	0	84	1
CCCCATACAAGGAAAAGCCATTTATATCAAA	1	17	1
GCCATTTATATCAAAAACCTTTTTCCTTTGG	1	33	1
TGGAGACCACTTAAAAACCTTTTCCTGCATT	2	58	1
TTATTCTCCTTAATAAATTTTAATGTTTTCC	2	91	0
AACCGTCGGGTGAGAAGTCATGG        	2	120	1
AAGGGGTTCCTCAAAAACTATCAAAT     	3	5	0
GAGGAACCCCTTAAAAAACATGGGCGAAATA	3	24	1
          * *********
MAP Score: 9.19727