AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_fusions018_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248799
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	korD	300	PAB0341

Motif 1
AATTAAATTTGAAATAATCCACTACAATGGTT	0	24	1
CTGGGATCAAGAACAAAACCATTGTAGTGGAT	0	40	0
CGAGCGTAAAGTAAAAATGCCCAAAACCCCAG	0	75	1
AAAACAAAAACTAAAAACCCGTAACACGAAAA	0	110	1
TCTACGATCCCTAAATATCCCTATAGGGGATA	0	194	1
AGGATACGGCCGACATATCCCCTATAGGGATA	0	209	0
TGGATTCTAGGCACAATTCCCTGGAATTAGCA	0	241	0
TAATGTTCATCTACAAAAGCTTTAA       	0	285	1
          * ******** *
MAP Score: 6.85787

Motif 2
CACTACAATGGTTTTGTTCTTGATCCCAGG	0	43	1
TTTAGTTTTTGTTTTCTCCTGGGGTTTTGG	0	95	0
ACACGAAAAAATTTTCATCTGTTCTTCGCT	0	133	1
CTGGACATTAATGTTCATCTACAAAAGCTT	0	277	1
          **********
MAP Score: 1.81639