AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_fusions018_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944248802
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	korD	300	PAB0341

Motif 1
TTTACGCTCGACCCTGGGATCAAGAACAAAA	0	54	0
GGGCATTTTTACTTTACGCTCGACCCTGGGA	0	66	0
TTCTCCTGGGGTTTTGGGCATTTTTACTTTA	0	81	0
ATTTTCATCTGTTCTTCGCTCCATATAACTT	0	143	1
ATCGTAGAGCGTTCCACGCATATTCAAAAAG	0	171	0
TGCGTGGAACGCTCTACGATCCCTAAATATC	0	182	1
CAGTTCATGGATTCTAGGCACAATTCCCTGG	0	249	0
          ***** *****
MAP Score: 3.89616

Motif 2
GTAAAAATGCCCAAAACCCCAGGAGAAAACAA	0	85	1
GGAATTGTGCCTAGAATCCATGAACTGGACAT	0	253	1
AAAACAAAAACTAAAAACCCGTAACACGAAAA	0	110	1
TGGTTTTGTTCTTGATCCCAGGGTCGAGCGTA	0	51	1
CCGTATCCTTGCTAATTCCAGGGAATTGTGCC	0	232	1
TCTACGATCCCTAAATATCCCTATAGGGGATA	0	194	1
GTAGATGAACATTAATGTCCAGTTCATGGATT	0	267	0
          ****** *** *
MAP Score: 0.953187