AlignACE 3.0 10/20/99 AlignACE2 -i PA/PA_operons002_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944248963 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PAB0485 200 hypothetical protein #1 PAB2415 284 hypothetical protein #2 PAB1886 300 hypothetical protein #3 PAB1884 180 hypothetical protein #4 for 300 PAB0798 #5 PAB0800 33 hypothetical ATP-BINDING PROTEIN #6 PAB0801 24 PAB0801 #7 PAB7306 56 hypothetical protein #8 PAB1399 247 hypothetical protein #9 PAB1389 300 PAB1389 Motif 1 CCTTTTTAATGACAAGCGGAAAGTGAAGATGAGGGTGATAAA 0 8 0 TCAGTGGAATGGAAAGACCTCCTGGCTGCAGCGGTTGGAATGGC 1 69 1 TTCTTCATGCTTCAAGCTCCAGATGTAGCTATGACGGAAGCAGC 1 141 1 GCAGCTATAGGTGCAGCCCTCAGCGGAGCCGTGTTCATCTTCGC 1 180 1 CGTGTTCATCTTCGCGATCAAGAGGACGAGAAGGTACGAGACGG 1 209 1 GGAGGAGGAAGAGAAGCCCGGTTGGTGGGTGAGGTGGTGAATC 1 251 1 ATAAATCATGGATTAGAGGAAGTCGGGGGTATGAACATCGTTAC 2 156 1 GATTACAGAGGTTACGATACGCTTGGAGAGGCGACCGTTTTGTT 2 213 1 ACCGTTTTGTTCACCGCAATAGCTGGAGCCGTGGCCCTTCTAAG 2 246 1 CCGTGGCCCTTCTAAGACCTTGGAGGAGGGAGGAGC 2 274 1 GTAAAATGCCGTTTCAAACCAAAGGTTGAGGAGGTTTGGAG 3 149 1 TAGTCTTCGTTGTTAGCAAGACGGGTAGGTACGAGGTGATGTGA 8 213 1 * *** * * * * ** MAP Score: 10.4079 Motif 2 AATGGAAAGACCTCCTGGCTGCAGCGGTTGGAATGGCGGCAGTTAGC 1 76 1 GATTTTCGGCGATCCAGGCGATAGCCTATGCGATAGCCTTCTACATC 8 102 1 AGGAAACGGGCATCGCCCTAATCGTAATAGGAATAGCCGGAGTTGCC 7 19 1 CGACCGTTTTGTTCACCGCAATAGCTGGAGCCGTGGCCCTTCTAAGA 2 244 1 CCTTCTACATCCTTATGGCTCCCGACATAGTTTTGGCCTACATAGCT 8 138 1 CGATACTCTTCTTCATGCTTCAAGCTCCAGATGTAGCTATGACGGAA 1 133 1 GTTCGGATTAGGCGGAGAGGACTGGAAGAGGTATCGCTACACCGACG 2 101 1 TCGATGTTAGGCTTCTCTAACCGGTGAATGAAATTGCAACCAAAATA 4 223 1 ATCCTACGGCCTTGAGGAGGTCTCTCTCCGTTATCGCTAGGTACGAG 8 58 0 TAGGTGCAGCCCTCAGCGGAGCCGTGTTCATCTTCGCGATCAAGAGG 1 187 1 AGACTAGTAAGGCCGAGTAAATTCCAACGGCAATAGCTATGTAGGCC 8 172 0 AGAAATTAGAGACCTCTTAATCGGGGGCAACTCTTGCAAATGATCTT 4 127 1 * ** * * * * * ** MAP Score: 10.2677 Motif 3 GGAGCTTGAAGCATGAAGAAGAGTATCGATGCG 1 128 0 GCGATCAAGAGGACGAGAAGGTACGAGACGGAG 1 222 1 GGTACGAGACGGAGGAGGAAGAGAAGCCCGGTT 1 241 1 CCCGGTTGGTGGGTGAGGTGGTGAATC 1 267 1 AATAAAGTTCGGATTAGGCGGAGAGGACTGGAA 2 95 1 GGAGAGGACTGGAAGAGGTATCGCTACACCGAC 2 114 1 CATAAATCATGGATTAGAGGAAGTCGGGGGTAT 2 155 1 TTTGTTCACCGCAATAGCTGGAGCCGTGGCCCT 2 251 1 CTAAGACCTTGGAGGAGGGAGGAGC 2 285 1 TCAAACCAAAGGTTGAGGAGGTTTGGAG 3 162 1 GGATGTTCGAGGAAACGGGCATCGCCC 7 4 1 AATCGTAATAGGAATAGCCGGAGTTGCC 7 38 1 AGACGGGTAGGTACGAGGTGATGTGA 8 231 1 *** **** ** * MAP Score: 10.2244 Motif 4 TGGTGGTGTTCCTTGAAGAAAAATCCATGCA 0 165 1 GGAGCTTGAAGCATGAAGAAGAGTATCGATG 1 130 0 TTCATCTTCGCGATCAAGAGGACGAGAAGGT 1 213 1 ACGAGACGGAGGAGGAAGAGAAGCCCGGTTG 1 244 1 AAGCCCGGTTGGTGGGTGAGGTGGTGAATC 1 264 1 GAGGCACCATGAAGAGAGCTTTAGCGT 2 6 1 GGCGGAGAGGACTGGAAGAGGTATCGCTACA 2 111 1 GTTACGATACGCTTGGAGAGGCGACCGTTTT 2 223 1 CTTCTAAGACCTTGGAGGAGGGAGGAGC 2 282 1 GCTATCTAATCTTTGGAGAGAAAAAAATAAG 3 115 1 TCAAACCAAAGGTTGAGGAGGTTTGGAG 3 162 1 GAGTTGCCCCCGATTAAGAGGTCTCTAATTT 4 129 0 AATCCTACGGCCTTGAGGAGGTCTCTCTCCG 8 75 0 ****** **** MAP Score: 9.60027 Motif 5 TTTGTTCACCGCAATAGCTGGAGCCGTGGCCCTTCTAA 2 251 1 AATAAAGTTCGGATTAGGCGGAGAGGACTGGAAGAGGT 2 95 1 GACGGAAGCAGCTATAGGTGCAGCCCTCAGCGGAGCCG 1 173 1 TTCGTTGTTAGCAAGACGGGTAGGTACGAGGTGATGTG 8 218 1 ACGAGACGGAGGAGGAAGAGAAGCCCGGTTGGTGGGTG 1 244 1 CATAAATCATGGATTAGAGGAAGTCGGGGGTATGAACA 2 155 1 AATCGTAATAGGAATAGCCGGAGTTGCC 7 38 1 CATGCTTCAAGCTCCAGATGTAGCTATGACGGAAGCAG 1 146 1 TTAATGACAAGCGGAAAGTGAAGATGAGGGTGATAAA 0 9 0 AGACCTCCTGGCTGCAGCGGTTGGAATGGCGGCAGTTA 1 83 1 GGAGCTTGAAGCATGAAGAAGAGTATCGATGCGAACAA 1 123 0 TTCGCGATCAAGAGGACGAGAAGGTACGAGACGGAGGA 1 219 1 *** *** * ** * MAP Score: 9.00497 Motif 6 TTCATGTTGAAAACGAATGGTTGGGTTCGAATA 0 92 0 ATTCGTTTTCAACATGAAGGGCGAAGGTAAACA 0 107 1 AATGGGTCATAAACCAATGGTGGTGTTCCTTGA 0 148 1 TAGCTGAGATAACCATAAGGAACACTATTATGT 1 31 0 TATTGCGGTGAACAAAACGGTCGCCTCTCCAAG 2 234 0 CCACAATAGTAAACCAAAGGTTGAACACTTTTA 3 40 1 TTGGAGAGAAAAAAATAAGGAAGTAAAATGCCG 3 127 1 ATGCCGTTTCAAACCAAAGGTTGAGGAGGTTTG 3 154 1 ATCTCTACAAAAACTCAAAGAAGAAAAACCCTT 4 87 1 AATTCTTGAAAAACGTAAAGATGGTGGATTCT 4 278 1 CATGAAAATAAAAATTAAAGTTCGGGG 5 4 0 CTATGTCGGGAGCCATAAGGATGTAGAAGGCTA 8 135 0 **** ***** * MAP Score: 8.92813 Motif 7 AATGACAAGCGGAAAGTGAAGATGAGGGTGATAAA 0 5 0 AAGACCTCCTGGCTGCAGCGGTTGGAATGGCGGCAGTTAG 1 82 1 TCTGGAGCTTGAAGCATGAAGAAGAGTATCGATGCGAACA 1 124 0 TTCATCTTCGCGATCAAGAGGACGAGAAGGTACGAGACGG 1 213 1 GAAGGTACGAGACGGAGGAGGAAGAGAAGCCCGGTTGGTG 1 238 1 AAGCCCGGTTGGTGGGTGAGGTGGTGAATC 1 264 1 AATAAAGTTCGGATTAGGCGGAGAGGACTGGAAGAGGTAT 2 95 1 ACATAAATCATGGATTAGAGGAAGTCGGGGGTATGAACAT 2 154 1 CATAGTCTTCGATTACAGAGGTTACGATACGCTTGGAGAG 2 203 1 CTATTGCGGTGAACAAAACGGTCGCCTCTCCAAGCGTATC 2 228 0 GCCCTTCTAAGACCTTGGAGGAGGGAGGAGC 2 279 1 AATGCCGTTTCAAACCAAAGGTTGAGGAGGTTTGGAG 3 153 1 GGATGTTCGAGGAAACGGGCATCGCCCTAAT 7 1 1 GAAAATCCTACGGCCTTGAGGAGGTCTCTCTCCGTTATCG 8 69 0 ACTATGTCGGGAGCCATAAGGATGTAGAAGGCTATCGCAT 8 129 0 ** ***** * * * MAP Score: 7.91028 Motif 8 AGTGAAGATGAGGGTGATAAA 0 1 0 TTTATAAGAATGGGTCATAAACCAATGGTG 0 140 1 CATGCATGGGAGGGTCTTAA 0 190 1 TTTGGGTCATAATTGTGTATCA 3 2 1 TGATGACCATTTGGTCATAACGCTTTGAAT 9 157 0 TTATGACCAAATGGTCATCAAATAACATCA 9 167 1 TATTTAACCTAAGGTGATAATCAAAATAGG 9 201 0 ********** MAP Score: 6.53646 Motif 9 AAGACCTCCTGGCTGCAGCGGTTGGAATGGCGGCAGTTAGCT 1 82 1 TCATGCTTCAAGCTCCAGATGTAGCTATGACGGAAGCAGCTA 1 145 1 TGACGGAAGCAGCTATAGGTGCAGCCCTCAGCGGAGCCGTGT 1 172 1 GAGGCACCATGAAGAGAGCTTTAGCGTTTTTATC 2 2 1 GAAGGGCCACGGCTCCAGCTATTGCGGTGAACAAAACGGTCG 2 244 0 GGGCTATCGTCTAAAATTTCTTCG 6 1 1 GGATGTTCGAGGAAACGGGCATCGCCCTAATCGTAATAGGAA 7 10 1 GGATGTAGAAGGCTATCGCATAGGCTATCGCCTGGATCGCCG 8 108 0 ACATCCTTATGGCTCCCGACATAGTTTTGGCCTACATAGCTA 8 144 1 TGGCCTACATAGCTATTGCCGTTGGAATTTACTCGGCCTTAC 8 171 1 ****** * * * * MAP Score: 5.67258 Motif 10 AGGAACACCACCATTGGTTTATGACCCATTC 0 147 0 TAATAGTGTTCCTTATGGTTATCTCAGCTAT 1 34 1 GAGAGGCGACCGTTTTGTTCACCGCAATAGC 2 238 1 AAGTGTTCAACCTTTGGTTTACTATTGTGGG 3 39 0 CCGTTTCAAACCAAAGGTTGAGGAGGTTTGG 3 157 1 CGGGCATCGCCCTAATCGTAATAGGAATAGC 7 25 1 ATTGTTTTCCCGTATTGGTGAAATTACGCCT 9 91 1 TATTTGATGACCATTTGGTCATAACGCTTTG 9 160 0 TTGATTATCACCTTAGGTTAAATATTGCACA 9 207 1 AGTCATAACTCCAATGGGTGACCCAGG 9 283 1 ********* * MAP Score: 5.57814 Motif 11 TCCTGGCTGCAGCGGTTGGAATGGCGGCAGTTAGCTTGTT 1 88 1 CTACATCTGGAGCTTGAAGCATGAAGAAGAGTATCGATGC 1 129 0 TTCAAGCTCCAGATGTAGCTATGACGGAAGCAGCTATAGG 1 151 1 CATAAATCATGGATTAGAGGAAGTCGGGGGTATGAACATC 2 155 1 AACCTCTGTAATCGAAGACTATGTCGGTAACGATGTTCAT 2 186 0 GAAGGGCCACGGCTCCAGCTATTGCGGTGAACAAAACGGT 2 246 0 ATTAGAAATTAGAGACCTCTTAATCGGGGGCAACTCTTGC 4 124 1 GGCAACTCCGGCTATTCCTATTACGATTAGGGCGATGCC 7 27 0 TCGTATTCTCGTACCTAGCGATAACGGAGAGAGACCTCCT 8 51 1 ACCTCCTCAAGGCCGTAGGATTTTCGGCGATCCAGGCGAT 8 84 1 CGGCGATCCAGGCGATAGCCTATGCGATAGCCTTCTACAT 8 108 1 CTATGTCGGGAGCCATAAGGATGTAGAAGGCTATCGCATA 8 128 0 AAATTCCAACGGCAATAGCTATGTAGGCCAAAACTATGTC 8 161 0 *** * ** *** * MAP Score: 4.08712 Motif 12 AAGAAAAATCCATGCATGGGAGGGTCTTAA 0 180 1 CTCCTGGCTGCAGCGGTTGGAATGGCGGCAGT 1 87 1 GGACTCAATGCAACCATTAAAGATGCGAATAT 2 54 0 CTACATAAATCATGGATTAGAGGAAGTCGGGG 2 152 1 CCGACATAGTCTTCGATTACAGAGGTTACGAT 2 199 1 AGAGGTTACGATACGCTTGGAGAGGCGACCGT 2 219 1 TGGCCCTTCTAAGACCTTGGAGGAGGGAGGAG 2 277 1 TTTTTCTCTCCAAAGATTAGATAGCGTAGAAA 3 108 0 AGTAAATCAGCAGAGATTGCAGCTTATCTCTA 4 62 1 CAAAGAAGAAAAACCCTTAGAAATTAGAAATT 4 102 1 AGGGATTTCACAGTCCTTAAAGGGTTTGGACT 4 192 1 CAATTTCATTCACCGGTTAGAGAAGCCTAACA 4 227 0 TGCATTCCTCCAAACATTAAAATGAGGAGTTC 9 40 0 CCTGGGTCACCCATTGGAGTTATGACTGA 9 281 0 ** ******** MAP Score: 3.90954 Motif 13 TTTCATATATAGGAAAACCTTTTTAATGAC 0 39 0 TCAGTGGAATGGAAAGACCTCCTGGCTGCA 1 69 1 CGGAGGAGGAAGAGAAGCCCGGTTGGTGGG 1 250 1 TCGTCGGTGTAGCGATACCTCTTCCAGTCC 2 119 0 AATAGCTGGAGCCGTGGCCCTTCTAAGACC 2 263 1 ATTGTGTATCACAAAAACCCCACAATAGTA 3 21 1 AACTCAAAGAAGAAAAACCCTTAGAAATTA 4 98 1 ATCATTTGCAAGAGTTGCCCCCGATTAAGA 4 141 0 TTCACCGGTTAGAGAAGCCTAACATCGAGT 4 221 0 GAAATTTTAGACGATAGCCC 6 0 0 TTACGATTAGGGCGATGCCCGTTTCCTCGA 7 16 0 GCGATAACGGAGAGAGACCTCCTCAAGGCC 8 68 1 GGCGATCCAGGCGATAGCCTATGCGATAGC 8 109 1 GATAGCCTATGCGATAGCCTTCTACATCCT 8 121 1 ********** MAP Score: 3.65553 Motif 14 AAAGACCTCCTGGCTGCAGCGGTTGGAATGGC 1 81 1 GCTGCAGCGGTTGGAATGGCGGCAGTTAGCTT 1 93 1 GCTCCAGATGTAGCTATGACGGAAGCAGCTAT 1 156 1 GAAGCAGCTATAGGTGCAGCCCTCAGCGGAGC 1 177 1 GCCCGGTTGGTGGGTGAGGTGGTGAATC 1 266 1 AAGTTCGGATTAGGCGGAGAGGACTGGAAGAG 2 99 1 AATCATGGATTAGAGGAAGTCGGGGGTATGAA 2 159 1 TACGATACGCTTGGAGAGGCGACCGTTTTGTT 2 225 1 TTCACCGCAATAGCTGGAGCCGTGGCCCTTCT 2 255 1 CTAATCGTAATAGGAATAGCCGGAGTTGCC 7 36 1 TTCTCGTACCTAGCGATAACGGAGAGAGACCT 8 56 1 TTGGCCTACATAGCTATTGCCGTTGGAATTTA 8 170 1 **** * ***** MAP Score: 2.61961 Motif 15 TCATTAAAAAGGTTTTCCTATATATGAAAG 0 40 1 AACCAATGGTGGTGTTCCTTGAAGAAAAAT 0 159 1 AGTACATAATAGTGTTCCTTATGGTTATCT 1 28 1 AATTGGTTTTCCAAAGAAAGATGA 4 4 1 AATTTCTAAGGGTTTTTCTTCTTTGAGTTT 4 97 0 ATTAAAATGAGGAGTTCCAAAACATTAAGT 9 27 0 ********** MAP Score: 2.29342 Motif 16 TGCAGCGGTTGGAATGGCGGCAGTTAGCTTGTT 1 95 1 GACGGAAGCAGCTATAGGTGCAGCCCTCAGCGG 1 173 1 AATAAAGTTCGGATTAGGCGGAGAGGACTGGAA 2 95 1 TTTGTTCACCGCAATAGCTGGAGCCGTGGCCCT 2 251 1 AATCGTAATAGGAATAGCCGGAGTTGCC 7 38 1 ** **** **** MAP Score: 2.02611 Motif 17 GGAAAGACCTCCTGGCTGCAGCGGTTGGAATGGCGGC 1 79 1 CTGCTTCCGTCATAGCTACATCTGGAGCTTGAAGCAT 1 147 0 CGAAGATGAACACGGCTCCGCTGAGGGCTGCACCTAT 1 186 0 TGGTTATATTCGCATCTTTAATGGTTGCATTGAGTCC 2 49 1 CCGTTTTGTTCACCGCAATAGCTGGAGCCGTGGCCCT 2 247 1 GGAGCCGTGGCCCTTCTAAGACCTTGGAGGAGGGAGG 2 270 1 AGAAATTAGAGACCTCTTAATCGGGGGCAACTCTTGC 4 127 1 CTCGATGTTAGGCTTCTCTAACCGGTGAATGAAATTG 4 222 1 CTATGTAGGCCAAAACTATGTCGGGAGCCATAAGGAT 8 146 0 CTCGGCCTTACTAGTCTTCGTTGTTAGCAAGACGGGT 8 202 1 ACTGGTCAGTCATAACTCCAATGGGTGACCCAGG 9 276 1 * * ** * **** * MAP Score: 0.755948 Motif 18 CAGTGGAATGGAAAGACCTCCTGGCTGCAGCGGTTGGAATGG 1 70 1 CATGCTTCAAGCTCCAGATGTAGCTATGACGGAAGCAGCTAT 1 146 1 GACGGAAGCAGCTATAGGTGCAGCCCTCAGCGGAGCCGTGTT 1 173 1 AAGGGCCACGGCTCCAGCTATTGCGGTGAACAAAACGGTCGC 2 243 0 CTCCAAACCTCCTCAACCTTTGGTTTGAAACGGCATTTTACT 3 148 0 GATGTTCGAGGAAACGGGCATCGCCCTAATCGTAATAGGAAT 7 11 1 CTGGATCGCCGAAAATCCTACGGCCTTGAGGAGGTCTCTCTC 8 77 0 GAAGGCTATCGCATAGGCTATCGCCTGGATCGCCGAAAATCC 8 101 0 TATGGCTCCCGACATAGTTTTGGCCTACATAGCTATTGCCGT 8 151 1 TCACCTCGTACCTACCCGTCTTGCTAACAACGAAGACTAGTA 8 210 0 ** * * * ** * ** MAP Score: 0.260446 Motif 19 AACATCGTTACCGACATAGTCTTCGATTAC 2 189 1 CTTATGGCTCCCGACATAGTTTTGGCCTAC 8 149 1 ATAGTTTTGGCCTACATAGCTATTGCCGTT 8 164 1 ********** MAP Score: 0.056947