AlignACE 3.0 10/20/99 AlignACE2 -i PA/PA_operons014_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249682 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PAB2329 300 PAB2329 #1 PAB0250 107 PAB0250 #2 PAB2083 90 hypothetical protein #3 apbA 56 PAB0512 #4 PAB0532 300 PAB0532 #5 PAB0537 300 PAB0537 #6 hisH-like 30 PAB0538 #7 PAB0539 67 hypothetical protein #8 fdhA-like 49 PAB2442 #9 metB 65 PAB0605 #10 aor-2 121 PAB0647 #11 for 300 PAB0798 #12 gdh-like 69 PAB2374 #13 PAB1389 300 PAB1389 #14 PAB1008 70 hypothetical DEHYDROGENASE Motif 1 CTTTCCATAGTGGAGGTGGTGGGCAAAG 12 51 1 GCCAAGATACTGGAGGTTAAGGGAGATGAAGT 4 98 1 ATTTCTTTTTTGGAGGTTTAGGC 6 17 1 CAAATCACAATGAAGGAGAAGGGTATTTAAAC 2 48 0 TTGCATGGAAGTGAGGCGCAGGCCAAGATACT 4 77 1 TTGACTATCTTGGAGGTGATTGAATTATGGAA 4 12 1 GGAGGACTTTGAGAGAGGGAGGTACGTGGTTA 4 253 1 TGACATTGAAGGGAGGTGCTTGAT 5 286 1 AGAAACCCTTGGAGGAGATAGCTAAAATTCC 5 9 1 TAAGCTTAACGAGTGGAGTAGGCTTGTACTTT 1 73 0 GTTGAAGTTTTAGAGAGCGAGGAGGACTTTGA 4 233 1 GATATTTCCTGGGAGGCCCTTGACTTTGGAAT 4 188 1 GGGTGTTTAATAGAGGAGAAGTCAAAAATAGA 10 12 0 AAATATAAGCTGGAGAGGTAGCGCCC 4 284 1 TTGAAAAACGTAAAGATGGTGGATTCT 11 283 1 AAGAGGGAGATAGAGAAGCTAGCCCAGGAGTG 5 207 1 ATGGACAGATTTGAGGAATAGGATTTTAAGGA 0 228 0 TAACTCCAATGGGTGACCCAGG 13 288 1 TCACAGTCCTTAAAGGGTTTGGACTCGATGTT 11 199 1 TCTAGAGGATTTGAGATAAAGGTTTCTAGGGA 5 84 1 ****** * *** MAP Score: 18.2516 Motif 2 TAAAGGCTGCGTTTTCCTTGATTCTACTCATAG 0 125 0 CGTTCATTTTCTCCACCGGAATTATGAAATCGA 1 12 0 TTTAAATACCCTTCTCCTTCATTGTGATTTGAT 2 49 1 GTTACTCCCCACTCATTTTAAATACTG 3 4 1 CATAATTAAGTTTTTCCATAATTCAATCACCTC 4 24 0 TAATCGTAAAGTCCGCATGTCTTACAAAACGTC 4 148 0 TTATATAAAGCTTTTCCTTGATTTATTTCTTCC 5 238 0 TCTTCTCATTTCTTTTTTGGAGGT 6 1 1 CCTTTGCTTTTATTTTTGTTAGAA 7 1 1 TTTTATAACGCTTTCCCAGGATTACTCAGCTAA 9 30 1 CTATTTTTGACTTCTCCTCTATTAAACACCCTT 10 13 1 TCGACAGGGATTTCACAGTCCTTAAAGGGTTTG 11 187 1 CATCTTTACGTTTTTCAAGAATTTTCATAAATA 11 268 0 TCTGGATATTGTTTTCCCGTATTGGTGAAATTA 13 84 1 TTACCTTAACTTTCTCAATCCTTAAGATATGAG 13 120 0 **** ** * *** MAP Score: 10.5898 Motif 3 GCTGAGTTAATCCCAGGAAGCTGCCCTGCCTTG 0 47 1 TAAATATCACTCCACAGAACGCTATGAGTAGAA 0 104 1 GTCAAGGGCCTCCCAGGAAATATCATCAAAGTA 4 179 0 AGCTATCTCCTCCAAGGGTTTCT 5 0 0 TAGCTAAAATTCCCGGGGTAAAGAAGGTCATCC 5 28 1 AAGAAGGTCATCCCTGGGAGGATATATTCCTCA 5 48 1 CGTTAACGTCTCCCTAGAAACCTTTATCTCAAA 5 93 0 TATAACGCTTTCCCAGGATTACTCAGCTAAGTT 9 33 1 AATTGGTTTTCCAAAGAAAGATGATCTTATCT 11 9 1 CAAATGATCTTCCATTGATAACGCTCGACAGGG 11 163 1 CGAATGTAGTTCCAAGGAAACCTTTTATACTTC 14 18 1 **** **** ** MAP Score: 9.91425 Motif 4 ACGAAGGCATTTGAAGAAGCTAAGCCTAATAAAGG 0 152 0 ATAATTCCGGTGGAGAAAATGAACGTGTTTTCAAG 1 20 1 GATTGAATTATGGAAAAACTTAATTATGTAATTAA 4 29 1 AGCCCAGGAGTGGAAGAAATAAATCAAGGAAAAGC 5 227 1 GCCTAAACCTCCAAAAAAGAAATGAGAAGA 6 6 0 AAAAATATTCTCGAACAATGGAAATGTTAAATAAG 10 43 0 AAATCTTATATGGACAAACGTAAAGATAAAATTGG 10 87 1 AGCTTATCTCTACAAAAACTCAAAGAAGAAAAACC 11 82 1 ATGAAAATTCTTGAAAAACGTAAAGATGGTGGATT 11 273 1 TATCACCAAATTGAATTAAGAAATGGATTAAAAAG 12 15 1 TATTAATATTTTGGGTAACTTAATGTTTTGGAACT 13 10 1 TTTTAATGTTTGGAGGAATGCAAATCCTCAATTTT 13 50 1 ATCTTAAGGATTGAGAAAGTTAAGGTAAAATAATT 13 125 1 AAAGTTAAGGTAAAATAATTCAAAGCGTTATGACC 13 140 1 * *** ** * ** * MAP Score: 9.71966 Motif 5 TAAAAGCTTTTGATATAGCC 2 0 1 CCAGAGGTTTAAATACCCTTCTCCTTCATT 2 42 1 AGAAACCCTTGGAGGAGATA 5 0 1 ACGTCTCCCTAGAAACCTTTATCTCAAATC 5 91 0 ATAAATCAAGGAAAAGCTTTATATAAAGAC 5 245 1 AATTTTGGCCAAAAATCTTTATATTTTTGA 8 22 1 TTGAAGTTGGGGATAGCTTTTATAACGCTT 9 13 1 AGTAATCCTGGGAAAGCGTTATAAAAGCTA 9 26 0 CTCCTCTATTAAACACCCTTATTTAACATT 10 26 1 CTCAAAGAAGAAAAACCCTTAGAAATTAGA 11 100 1 GAAATGGATTAAAAAGCCTTTCCATAGTGG 12 34 1 GTAGTTCCAAGGAAACCTTTTATACTTCTT 14 23 1 ********** MAP Score: 9.53155 Motif 6 CTTCCTGGGATTAACTCAGCTAGACTTTCTCAAGCTCA 0 29 0 ATGTTATCACTAAAGTCTGAAATAATTTTCATCCTTAA 0 197 1 TTTGTGTAGTTTAATTTAATTAAAGTTTCCATCTGAAC 0 266 0 TATAGCCAGATTAACCTGGCCAGAGGTTTAAATACCCT 2 23 1 TGGAGGTGATTGAATTATGGAAAAACTTAATTATGTAA 4 22 1 GTGGAAGAAATAAATCAAGGAAAAGCTTTATATAAAGA 5 236 1 GATTTGAAGTTGGGGATAGCTTTTATAACGCT 9 4 1 GAGAATATTTTTATTTTCGAAAAATCTTATATGGACAA 10 66 1 AACGTAAAGATAAAATTGGTGTTATTTT 10 103 1 ATTTCTTAATTCAATTTGGTGATATCTTA 12 1 0 * ** * * * * *** MAP Score: 7.50115 Motif 7 TCCACTCGTTAAGCTTAGCATAGGGAGGG 1 88 1 GATTACTTTGATGATATTTCCTGGGAGGCCCTTGACTT 4 176 1 AGACCAGTTGAAGTTTTAGAGAGCGAGGAGGACTTTGA 4 227 1 GTACGTGGTTAAATATAAGCTGGAGAGGTAGCGCCC 4 274 1 CGGGGTAAAGAAGGTCATCCCTGGGAGGATATATTCCT 5 41 1 ATTTGAGATAAAGGTTTCTAGGGAGACGTTAACGGGGT 5 92 1 GGGTTAAAGCTAGTTGCTAAGAGCGACGGTTCCGTTCA 5 126 1 CGTGGTTGACAAGAAGGATCGGGAGCGGGTGAAGAGGG 5 176 1 GGAGATAGAGAAGCTAGCCCAGGAGTGGAAGAAATAAA 5 212 1 *** * * * **** MAP Score: 7.42175 Motif 8 AGGTGATTGAATTATGGAAAAACTTAATTATGTAATT 4 25 1 GAAGAAATAAATCAAGGAAAAGCTTTATATAAAGACT 5 239 1 TCAATGTCATATCAAGTTAAGTCTTTATATAAAGCTT 5 258 0 TAGCTGAGTAATCCTGGGAAAGCGTTATAAAAGCTAT 9 25 0 AATATTCTCGAACAATGGAAATGTTAAATAAGGGTGT 10 38 0 CAAAAACTCAAAGAAGAAAAACCCTTAGAAATTAGAA 11 94 1 ATTTATGAAAATTCTTGAAAAACGTAAAGATGGTGGA 11 269 1 CACCACCTCCACTATGGAAAGGCTTTTTAATCCATTT 12 35 0 TAATGTTTGGAGGAATGCAAATCCTCAATTTTCTGGA 13 53 1 TAATTTCACCAATACGGGAAAACAATATCCAGAAAAT 13 80 0 GTTAAGGTAAAATAATTCAAAGCGTTATGACCAAATG 13 143 1 * * ** *** * * * MAP Score: 6.46638 Motif 9 GCGTTCAGATGGAAACTTTAATTAAATTAAACTA 0 264 1 ATTGAATTATGGAAAAACTTAATTATGTAATTAA 4 30 1 TAGAATTTGAGGGGACGTTTTGTAAGACATGCGG 4 135 1 TCTTTACCCCGGGAATTTTAGCTATCTCCTCCAA 5 18 0 AATAAATCAAGGAAAAGCTTTATATAAAGACTTA 5 244 1 TTGAAGTTGGGGATAGCTTTTATAACGCTTTCCC 9 13 1 CTCGAACAATGGAAATGTTAAATAAGGGTGTTTA 10 35 0 CCTCCACTATGGAAAGGCTTTTTAATCCATTTCT 12 33 0 GTAGTTCCAAGGAAACCTTTTATACTTCTTTTCG 14 23 1 ***** *** ** MAP Score: 6.07664 Motif 10 GAGGAATAGGATTTTAAGGATGAAAATTATTTCAGA 0 212 0 ACTTTAATTAAATTAAACTACACAAACTTTCT 0 278 1 TCTTGGAGGTGATTGAATTATGGAAAAACTTAATTA 4 19 1 ATTATGGAAAAACTTAATTATGTAATTAAAGAATTC 4 35 1 GGAGTGGAAGAAATAAATCAAGGAAAAGCTTTATAT 5 233 1 GAGTAAGTCAAAAATATAAAGATTTTTGGC 8 29 0 AATAGAGGAGAAGTCAAAAATAGAAG 10 0 0 TCTCTACAAAAACTCAAAGAAGAAAAACCCTTAGAA 11 88 1 GATATCACCAAATTGAATTAAGAAATGGATTAAAAA 12 13 1 CTAAGGTGATAATCAAAATAGGGAAATGATGTTATT 13 187 0 ** * ** * * *** MAP Score: 6.04499 Motif 11 TAAAATCCTATTCCTCAAATCTGTCCATCGT 0 232 1 GTTACTCCCCACTCATTTTAAATACTGGC 3 8 1 TCTTGGCCTGCGCCTCACTTCCATGCAATCT 4 74 0 TACAAAACGTCCCCTCAAATTCTATTATAAC 4 128 0 GGAGGATATATTCCTCAGATTCTAGAGGATT 5 64 1 TCTTCTCATTTCTTTTTTGGAG 6 1 1 TGTTTTGGAACTCCTCATTTTAATGTTTGGA 13 33 1 AGGAATGCAAATCCTCAATTTTCTGGATATT 13 63 1 GGTGAAATTACGCCTCATATCTTAAGGATTG 13 107 1 ******* *** MAP Score: 5.53202 Motif 12 TGAGTAGAATCAAGGAAAACGCAGCCTTTATTAG 0 128 1 CCTTGACTATCTTGGAGGTGATTGAATTATGGAA 4 10 1 ATGATATTTCCTGGGAGGCCCTTGACTTTGGAAT 4 186 1 TTTTAGAGAGCGAGGAGGACTTTGAGAGAGGGAG 4 240 1 AGAAACCCTTGGAGGAGATAGCTAAAATTCC 5 7 1 ATAAAGGTTTCTAGGGAGACGTTAACGGGGTTAA 5 99 1 AGAAATAAATCAAGGAAAAGCTTTATATAAAGAC 5 241 1 TATGACATTGAAGGGAGGTGCTTGAT 5 284 1 CTGAGTAATCCTGGGAAAGCGTTATAAAAGCTAT 9 25 0 GCCTTTCCATAGTGGAGGTGGTGGGCAAAG 12 49 1 AATGTAGTTCCAAGGAAACCTTTTATACTTCTTT 14 20 1 * ***** * *** MAP Score: 5.0356 Motif 13 AATCTCGACAAGGCAGGGCAGCTTCCTGGGATT 0 55 0 TCTGAACGCTACGATGGACAGATTTGAGGAATA 0 240 0 CGTTAAGCTTAGCATAGGGAGGG 1 94 1 TAGCCAGATTAACCTGGCCAGAGGTTTAAATAC 2 25 1 TCAAATCACAATGAAGGAGAAGGGTATTTAAAC 2 48 0 TTGTGATTTGATGATGGTGATGTCCCGCCA 2 70 1 AATCACCTCCAAGATAGTCAAGG 4 0 0 GGTTAAATATAAGCTGGAGAGGTAGCGCCC 4 280 1 GTTGACAAGAAGGATCGGGAGCGGGTGAAGAGG 5 180 1 GGAGATAGAGAAGCTAGCCCAGGAGTGGAAGAA 5 212 1 TCCATTGATAACGCTCGACAGGGATTTCACAGT 11 173 1 TCATATCTTAAGGATTGAGAAAGTTAAGGTAAA 13 121 1 TCATACACCTAAGAATGAGAACTTGAAACTTAA 13 244 0 * *** * ***** MAP Score: 4.86037 Motif 14 AGCCATAACGAGCCCTGAGCTTGAGAAAGTCTAGCTGAGT 0 14 1 GCTCGATTTCATAATTCCGGTGGAGAAAATGAACGTGTTT 1 10 1 GGAGCGGGTGAAGAGGGAGATAGAGAAGCTAGCCCAGGAG 5 197 1 TTATTTAACATTTCCATTGTTCGAGAATATTTTTATTTTC 10 44 1 GACCAGTCATACACCTAAGAATGAGAACTTGAAACTTAAA 13 243 0 TACGCCTCATATCTTAAGGATTGAGAAAGTTAAGGTAAAA 13 115 1 TTGCAATTTCATTCACCGGTTAGAGAAGCCTAACATCGAG 11 222 0 GATAGCTAAAATTCCCGGGGTAAAGAAGGTCATCCCTGGG 5 26 1 CCATCATCAAATCACAATGAAGGAGAAGGGTATTTAAACC 2 47 0 CCTTTGCTTTTATTTTTGTTAGAAAACGTGATATATTAG 7 9 1 TTCGAACAGCTCAAGTGTGCTTGAAAACACGTTCATTTTC 1 34 0 AGAAACCCTTGGAGGAGATAGCTAAAATTCCC 5 2 1 * * * * ***** * MAP Score: 4.46913 Motif 15 TGTCGAGATTATAGTTCCTATTGTTATAAATAT 0 78 1 TGCCTTCGTCATAGGATCCATGTTATCACTAAA 0 178 1 GCTCGATTTCATAATTCCGGTGGAGAAAATGAA 1 10 1 CTCCCAGGAAATATCATCAAAGTAATCGTAAAG 4 170 0 TGGTCTTATTTTAATTCCAAAGTCAAGGGCCTC 4 200 0 TGGAATTAAAATAAGACCAGTTGAAGTTTTAGA 4 214 1 TCTAACAAAAATAAAAGCAAAGG 7 0 0 AAAATAACACCAATTTTATCTTTACG 10 105 0 TAAGATATCACCAAATTGAATTAAGAA 12 4 1 ATTCAAAGCGTTATGACCAAATGGTCATCAAAT 13 157 1 TTTGTGCAATATTTAACCTAAGGTGATAATCAA 13 207 0 CTGGTCAGTCATAACTCCAATGGGTGACCCAGG 13 277 1 GATACCACCGAATGTAGTTCCAAG 14 1 1 *** *** **** MAP Score: 3.62409 Motif 16 CAGGGCAGCTTCCTGGGATTAACTCAGCTA 0 45 0 CTCATAGCGTTCTGTGGAGTGATATTTATA 0 102 0 ATTTAAAATGAGTGGGGAGTAAC 3 3 0 CCTTGACTATCTTGGAGGTGATTGAATT 4 8 1 GCAGGCCAAGATACTGGAGGTTAAGGGAGA 4 94 1 TGATGATATTTCCTGGGAGGCCCTTGACTT 4 184 1 AGTTTTAGAGAGCGAGGAGGACTTTGAGAG 4 238 1 AGAAACCCTTGGAGGAGATAGCTAA 5 5 1 AGAAGGTCATCCCTGGGAGGATATATTCCT 5 49 1 GATATGACATTGAAGGGAGGTGCTTGAT 5 282 1 TCTCATTTCTTTTTTGGAGGTTTAGGC 6 13 1 AAGCCTTTCCATAGTGGAGGTGGTGGGCAA 12 47 1 CTCATTTTAATGTTTGGAGGAATGCAAATC 13 46 1 CCTGGGTCACCCATTGGAGTTATGACTGAC 13 280 0 ********** MAP Score: 2.7901 Motif 17 TAGGATCCATGTTATCACTAAAGTCTGAAAT 0 189 1 CGTTATAAAAGCTATCCCCAACTTCAAATC 9 9 0 ATTTGCAAGAGTTGCCCCCGATTAAGAGGTC 11 137 0 TAAGATATCACCAAATTGAATTAA 12 3 1 AATTCAAAGCGTTATGACCAAATGGTCATCA 13 156 1 ACCCATTGGAGTTATGACTGACCAGTCATAC 13 271 0 GATACCACCGAATGTAGTTCC 14 0 1 * ********* MAP Score: 2.37208