AlignACE 3.0 10/20/99 AlignACE2 -i PA/PA_operons018_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944249931 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PAB2277_PAB0066 95 PAB2277: PAB2277, PAB0066: PAB0066 #1 PAB2191 74 PAB2191 #2 PAB0211 300 hypothetical protein #3 PAB2118 68 hypothetical protein #4 PAB2117 54 hypothetical protein #5 PAB2116 294 hypothetical protein #6 PAB2062 300 hypothetical protein #7 PAB1561 283 PAB1561 #8 PAB0960 300 hypothetical protein #9 PAB0961 99 PAB0961 #10 PAB1020 112 hypothetical protein #11 PAB1250 112 PAB1250 Motif 1 GCTCCATCACCTGGAAAAGTTT 0 2 1 GCTTATCCCTCCTTTCAAAGGCA 1 61 0 CCTATACCACCTGATAGCATAT 3 56 0 TAGTGTCGATTACACCATCTATGTTATGGA 6 20 1 CTAACCATGCTCCACCACCTTCTTGGGATT 6 220 1 GTGCAATCTCCCACCTCTATCTTCTT 7 6 1 CCCCCAAAGAGAGCCCACCTTAACAGGCTG 8 63 0 TTGACCGGGCTACACCACCGGGGCGCCCAA 8 200 1 GATATCACCTTCAATTGATA 8 290 0 TTCCTGTCACCTCCTAAACAATTTA 9 84 0 TTTTATCCCTCCTATGTTTCATG 10 3 1 CTAAAGTACCTCACCTTAAAGATACT 10 96 0 ********** MAP Score: 13.3381 Motif 2 TTTCAGGCTGGGCAAGGCTCGTCATCCGCCATAGCTCATTT 2 29 1 ACCGAGCCCCTGCGAGGGATTGTACCCTCGCTGTCGGCATT 2 104 0 CCCTCGCAGGGGCTCGGTCTACCCGCCCCCGCAAGGTGTTC 2 127 1 CGGCCCTGTGGGCTCGGCGTGAGCACACCCCGCTCATCGAA 2 171 0 GAGCCCACAGGGCCGGTGCATCCGCCCGCGGGATCAATGAC 2 197 1 TTTTGCTGTAGGCCGGCAACAGAGACCCGGCGGTCATTGAT 2 229 0 GCGTCGTAAGGTCCAGTTACTGCATCCGCCCTGGTAACCCC 6 109 1 CTGGTGCCCCGGCCGGGATTTGAACCCGGGGCGCGGGCTCG 8 145 1 CGGTCAAACATGCGGGCCTTTCGAGCCCGCGCCCCGGGTTC 8 166 0 CCGCATGTTTGACCGGGCTACACCACCGGGGCGCCCAATAC 8 192 1 TGCCTTCCTCGACAAGTTTTTTATACCGAGCAAATAGTTCA 11 55 1 *** * ****** MAP Score: 13.337 Motif 3 ATATAACATTCCGCCAAAATCATTATGAAGGTTTC 0 57 0 ATGCCTGGTGTCGCATAATATTTTTAAGTTTCTTT 1 19 1 GGTCTACCCGCCCCCGCAAGGTGTTCGGGTTCGAT 2 142 1 CATCCACACCTCCACATTTTGTTATTTATGGGG 5 8 1 TAAGAAGGGTTCACCAAAACTTTTTGAACGAGCTT 7 242 1 GGGGGGTGAGCCTCCTAAAATTGTGAAGCTTCTTG 8 88 1 CACCAGAATTCCACCAAACGCTGTTCTACAAGAAG 8 116 0 CCCCCGAATTCCACTTAAAAATTTTTCGAATAATG 8 237 1 AACCTGTTGATCTCCATAGGATTTTAGTAAGAAAA 9 27 0 TTCCTGTCACCTCCTAAACAATTTATTCTACGGC 9 75 0 CCTCTGCCTTCCTCGACAAGTTTTTTATACCGAGC 11 51 1 TTCCTTCTCCTCCTCACCCTTTTTGATGAACTA 11 89 0 ** ** ** **** MAP Score: 11.8341 Motif 4 GGGCTACACCACCGGGGCGCCCAATACCAT 8 206 1 GGGATTTGAACCCGGGGCGCGGGCTCGAAA 8 159 1 CGAACACCTTGCGGGGGCGGGTAGACCGAG 2 139 0 TCAAATCCCGGCCGGGGCACCAGAATTCCA 8 138 0 ACAATCCCTCGCAGGGGCTCGGTCTACCCG 2 122 1 CGCCGAGCCCACAGGGCCGGTGCATCCGCC 2 193 1 ACCTGGGGTTACCAGGGCGGATGCAGTAAC 6 124 0 ATCAATGACCGCCGGGTCTCTGTTGCCGGC 2 229 1 GTCATTGATCCCGCGGGCGGATGCACCGGC 2 208 0 AATTTATTCTACGGCGCCTCTCAATTTAAA 9 60 0 CGCATGTTTGACCGGGCTACACCACCGGGG 8 193 1 AATGCCGACAGCGAGGGTACAATCCCTCGC 2 104 1 ********** MAP Score: 11.4807 Motif 5 CAAGGTGTTCGGGTTCGATGAGCGGGGTGTGCTCACG 2 158 1 CCCGCGCCCCGGGTTCAAATCCCGGCCGGGGCACCAG 8 145 0 ATCCGCCCGCGGGATCAATGACCGCCGGGTCTCTGTT 2 216 1 CTGTTAAGGTGGGCTCTCTTTGGGGGGTGAGCCTCCT 8 67 1 CCCGGGGCGCGGGCTCGAAAGGCCCGCATGTTTGACC 8 169 1 TCCCTCGCAGGGGCTCGGTCTACCCGCCCCCGCAAGG 2 126 1 ATGTTTGACCGGGCTACACCACCGGGGCGCCCAATAC 8 196 1 ATGACCGCCGGGTCTCTGTTGCCGGCCTACAGCAAAA 2 233 1 TCTCTGAATAGCGTTCGAATATCAGGCTTAACTCCCT 5 144 1 *** ** ***** MAP Score: 10.6672 Motif 6 TAAATATAACATTCCGCCAAAATCATTATGAAGGTT 0 59 0 TATTCAGAGAGTTCATCAATAATGTTGAATTATAGA 5 118 0 TTCCTAGTTAATTCCCCTAAATCGTTGGCCTCTATG 6 64 1 ATCTTCTTAAGTTCCTCTATAACTTTCTCAACCTTC 6 154 1 ATTTTAGTTGGTTCATCAATTAACATAATTTTTATA 7 200 0 AATAAGAAGGGTTCACCAAAACTTTTTGAACGAGCT 7 240 1 ACCAAACGCTGTTCTACAAGAAGCTTCACAATTTTA 8 103 0 ATTCCCCCGAATTCCACTTAAAAATTTTTCGAATAA 8 234 1 TTAAATATACATTCTTACACAATATTGAGTAAGAG 11 9 0 TTACCTCTGCCTTCCTCGACAAGTTTTTTATACCGA 11 48 1 CGAGCAAATAGTTCATCAAAAAGGGTGAGGAGGAGA 11 81 1 **** * * ** ** MAP Score: 8.8258 Motif 7 TTTCAGGCTGGGCAAGGCTCGTCATCCGCCATAGCTCATT 2 29 1 AATGCCGACAGCGAGGGTACAATCCCTCGCAGGGGCTCGG 2 104 1 CACCTTGCGGGGGCGGGTAGACCGAGCCCCTGCGAGGGAT 2 125 0 CCCGCAAGGTGTTCGGGTTCGATGAGCGGGGTGTGCTCAC 2 154 1 CGAGCCCACAGGGCCGGTGCATCCGCCCGCGGGATCAATG 2 196 1 GATCAATGACCGCCGGGTCTCTGTTGCCGGCCTACAGCAA 2 228 1 GCGTCGTAAGGTCCAGTTACTGCATCCGCCCTGGTAACCC 6 109 1 CTGGTGCCCCGGCCGGGATTTGAACCCGGGGCGCGGGCTC 8 145 1 TGAACCCGGGGCGCGGGCTCGAAAGGCCCGCATGTTTGAC 8 165 1 CCGCATGTTTGACCGGGCTACACCACCGGGGCGCCCAATA 8 192 1 * **** ***** MAP Score: 8.72541 Motif 8 GCTCCATCACCTGGAAAAGTTT 0 0 1 TAATACCGACATCATCACCTTTCAGGCTGGG 2 9 1 GCTGGGCAAGGCTCGTCATCCGCCATAGCTCA 2 35 1 CCTATACCACCTGATAGCATAT 3 56 0 CATCCACACCTCCACATTTTGTTATTTATG 5 8 1 TAACAGAACTGCTAATTATCTTAATTAATCCT 5 218 1 CTTAATTAATCCTCTTTCCCTTTACATTGAAA 5 237 1 TTCTTAAGTTCCTCTATAACTTTCTCAACCTT 6 157 1 CCCTAACCATGCTCCACCACCTTCTTGGGATT 6 218 1 ATATCATTTTCCTTCTCAACTTAAGGATAGGG 6 278 1 CAATCTCCCACCTCTATCTTCTTCTAGTTTTA 7 13 1 AGAGAGCCCACCTTAACAGGCTGTTAATAAAA 8 54 0 TCTACAAGAAGCTTCACAATTTTAGGAGGCTC 8 95 0 GTTTGACCGGGCTACACCACCGGGGCGCCCAA 8 198 1 CCTGTCACCTCCTAAACAATTTATTCTACGGC 9 75 0 CCTCTGCCTTCCTCGACAAGTTTTTTATACCG 11 51 1 TTCCTTCTCCTCCTCACCCTTTTTGATGAA 11 92 0 **** *** *** MAP Score: 8.31411 Motif 9 TTCTGGTGCCCCGGCCGGGATTTGAACCCGGGGCGCGGGCTCG 8 143 1 TGGTATTGGGCGCCCCGGTGGTGTAGCCCGGTCAAACATGCGG 8 192 0 GGCGTGAGCACACCCCGCTCATCGAACCCGAACACCTTGCGGG 2 154 0 GGATCAATGACCGCCGGGTCTCTGTTGCCGGCCTACAGCAAAA 2 227 1 CCCGGTCAAACATGCGGGCCTTTCGAGCCCGCGCCCCGGGTTC 8 166 0 TCCAGTTACTGCATCCGCCCTGGTAACCCCAGGTATCTTCTTA 6 120 1 ACACCTTGCGGGGGCGGGTAGACCGAGCCCCTGCGAGGGATTG 2 123 0 CCGAGCCCACAGGGCCGGTGCATCCGCCCGCGGGATCAATGAC 2 195 1 GATATATAAACTTTTCGGAATTGGAGCCCTCTGGTAATCTATT 5 71 1 * **** **** * MAP Score: 7.49794 Motif 10 GCTCCATCACCTGGAAAAGTT 0 1 1 AGGCCCTCCCTAAATATAACATTCC 0 80 0 ATTGCAGATACCCCATAAATAACAAAATGT 5 23 0 TCCTCTATAACTTTCTCAACCTTCCCTATC 6 166 1 ATATCATTTTCCTTCTCAACTTAAGGATAG 6 278 1 GTTCCATGATCTCCCTAGACGATGTCGATG 7 94 1 GAAGCGATAACCCCATCGACATCGTCTAGG 7 107 0 TCACGTCCAACTTCCTTAATTCTTGCATCC 8 14 0 CAAAGAGAGCCCACCTTAACAGGCTGTTAA 8 59 0 GGGGGGTGAGCCTCCTAAAATTGTGAAGCT 8 88 1 TTCCTGTCACCTCCTAAACAATTTATTCT 9 80 0 TTACCTCTGCCTTCCTCGACAAGTTTTTTA 11 48 1 TTCCTTCTCCTCCTCACCCTTTTTGATG 11 94 0 ********** MAP Score: 7.38286 Motif 11 AAATATGAATGCCGACAGCGAGGGTACAAT 2 97 1 GGGTACAATCCCTCGCAGGGGCTCGGTCTA 2 118 1 GTCTACCCGCCCCCGCAAGGTGTTCGGGTT 2 143 1 CTCACGCCGAGCCCACAGGGCCGGTGCATC 2 189 1 CGGTGCATCCGCCCGCGGGATCAATGACCG 2 210 1 CGGGATCAATGACCGCCGGGTCTCTGTTGC 2 225 1 ATTCTGGTGCCCCGGCCGGGATTTGAACCC 8 142 1 GGCTCGAAAGGCCCGCATGTTTGACCGGGC 8 180 1 GACCGGGCTACACCACCGGGGCGCCCAATA 8 202 1 ********** MAP Score: 7.05421 Motif 12 CCTACCACCATGCCTGGTGTCGCATAA 1 5 1 CAAGGCTCGTCATCCGCCATAGCTCATTTGGT 2 41 1 GGGCTCGGTCTACCCGCCCCCGCAAGGTGTTC 2 136 1 CGGGCGGATGCACCGGCCCTGTGGGCTCGGCG 2 193 0 AGGGCCGGTGCATCCGCCCGCGGGATCAATGA 2 205 1 CCAGTTACTGCATCCGCCCTGGTAACCCCAGG 6 121 1 TTAGGAGGCTCACCCCCCAAAGAGAGCCCACC 8 74 0 GAATTCTGGTGCCCCGGCCGGGATTTGAACCC 8 140 1 GCCTTTCGAGCCCGCGCCCCGGGTTCAAATCC 8 160 0 ********* * MAP Score: 6.45817 Motif 13 AATTCCTATGCCAAAACTTTTCCAGGTGATGGAG 0 11 0 TTAAGATTTCCGAAACCTTCATAATGATTTTGGC 0 46 1 CCTGGTGTCGCATAATATTTTTAAGTTTCTTTAG 1 22 1 TCATTTTAAGCTAAATGCTTATAACCT 4 3 0 GCTCCAATTCCGAAAAGTTTATATATCTCTATTT 5 64 0 ACATTAGCTTCCACGGTTTCTTCATGACATGAAT 7 56 1 CATCAATTAACATAATTTTTATAAATATCAAAAC 7 189 0 GAAGGGTTCACCAAAACTTTTTGAACGAGCTTTT 7 245 1 TAACATTATTCGAAAAATTTTTAAGTGGAATTCG 8 241 0 CGAAACTTTTATTAACCTTTTCTT 9 0 1 TTTTATCCCTCCTATGTTTCATGATGATTTTATA 10 10 1 TAATAATTTTCCTAGGATTTATAACTGAGCAACT 10 57 1 CTGCCTTCCTCGACAAGTTTTTTATACCGAGCAA 11 54 1 TTATACCGAGCAAATAGTTCATCAAAAAGGGTGA 11 75 1 * *** ***** * MAP Score: 5.9073 Motif 14 TGCCTTTGAAAGGAGGGATAAGC 1 61 1 TAATTAAGAAAAAGGTATTAAATTTTTGCTG 2 262 0 GAGAGGCCTCAAGGGAGTTAAGCCTGATATT 5 161 0 TACTTAAATCATGAGTATTAACAGAACTGCT 5 200 1 TGTAAAGGGAAAGAGGATTAATTAAGATAAT 5 232 0 CCAACGATTTAGGGGAATTAACTAGGAAGAT 6 61 0 TGGTAATTCAAGAAGCGATAACCCCATCGAC 7 117 0 CATGAAACATAGGAGGGATAAAA 10 2 0 AAAATTATTAAAGAGCATTAAATTATAAAAT 10 36 0 ***** ***** MAP Score: 5.70411 Motif 15 CACCTTTCAGGCTGGGCAAGGCTCGTCATCCGCCATAGCTCAT 2 25 1 ATGAATGCCGACAGCGAGGGTACAATCCCTCGCAGGGGCTCGG 2 101 1 CGAACACCTTGCGGGGGCGGGTAGACCGAGCCCCTGCGAGGGA 2 126 0 GGTTCGATGAGCGGGGTGTGCTCACGCCGAGCCCACAGGGCCG 2 169 1 CGCCGAGCCCACAGGGCCGGTGCATCCGCCCGCGGGATCAATG 2 193 1 ATCAATGACCGCCGGGTCTCTGTTGCCGGCCTACAGCAAAAAT 2 229 1 TGGTGCCCCGGCCGGGATTTGAACCCGGGGCGCGGGCTCGAAA 8 146 1 CGCATGTTTGACCGGGCTACACCACCGGGGCGCCCAATACCAT 8 193 1 ** *** * * *** MAP Score: 4.82491 Motif 16 AGATTTCCGAAACCTTCATAATGATTTTGGCGGA 0 49 1 TCTATAATTCAACATTATTGATGAACTCTCTGAA 5 118 1 AAAGGGAAAGAGGATTAATTAAGATAATTAGCAG 5 226 0 ATTAACTAGGAAGATTCTACATGACATCCATAAC 6 42 0 TTAGCTTCCACGGTTTCTTCATGACATGAATTTC 7 59 1 TACTCAAGTAATGGTAATTCAAGAAGCGATAACC 7 125 0 TATAAAAATTATGTTAATTGATGAACCAACTAAA 7 200 1 TAAAATTGTGAAGCTTCTTGTAGAACAGCGTTTG 8 103 1 TATCCCTCCTATGTTTCATGATGATTTTATAATT 10 13 1 AAATCCTAGGAAAATTATTAAAGAGCATTAAATT 10 43 0 TCTCCTCCTCACCCTTTTTGATGAACTATTTGCT 11 83 0 * * ** ** **** MAP Score: 4.24243 Motif 17 TCACCTTTCAGGCTGGGCAAGGCTCGTCATCC 2 24 1 GGTAGACCGAGCCCCTGCGAGGGATTGTACCC 2 118 0 CGGTCTACCCGCCCCCGCAAGGTGTTCGGGTT 2 141 1 GCGGGCGGATGCACCGGCCCTGTGGGCTCGGC 2 194 0 ATCAATGACCGCCGGGTCTCTGTTGCCGGCCT 2 229 1 TCCAGTTACTGCATCCGCCCTGGTAACCCCAG 6 120 1 TCAAATCCCGGCCGGGGCACCAGAATTCCACC 8 136 0 GGCCTTTCGAGCCCGCGCCCCGGGTTCAAATC 8 161 0 CGGTGGTGTAGCCCGGTCAAACATGCGGGCCT 8 188 0 ******** * * MAP Score: 4.01685 Motif 18 GCTCCATCACCTGGAAAAGTTTTGGCATA 0 6 1 TTTAGGTAACTGCCTTTGAAAGGAGGGATAAGC 1 51 1 TAGCTTAAAATGAACTCGATAGGTTATCACGAG 4 24 1 CTCTTTCCCTTTACATTGAAAGGGGAAAATAAA 5 248 1 ATGTGAACTATCGCGTCGTAAGGTCCAGTTACT 6 97 1 CGATTGAAACTTAACTCGTTAAGCTTATATCAT 6 252 1 CCCTATCCTTAAGTTGAGAAGGAAAATGATA 6 279 0 GTGAGCCTCCTAAAATTGTGAAGCTTCTTGTAG 8 93 1 ATCAACAGGTTTAAATTGAGAGGCGCCGTAGAA 9 51 1 * ** **** *** MAP Score: 2.6656 Motif 19 CTTGCGGGGGCGGGTAGACCGAGCCCCTGCGAGGGAT 2 125 0 GCAAGGTGTTCGGGTTCGATGAGCGGGGTGTGCTCAC 2 157 1 ATGCACCGGCCCTGTGGGCTCGGCGTGAGCACACCCC 2 181 0 ATTGATCCCGCGGGCGGATGCACCGGCCCTGTGGGCT 2 198 0 CATCCGCCCGCGGGATCAATGACCGCCGGGTCTCTGT 2 215 1 GATGCAGTAACTGGACCTTACGACGCGATAGTTCACA 6 98 0 AGGCCCTAACCATGCTCCACCACCTTCTTGGGATTTA 6 215 1 GTGGGCTCTCTTTGGGGGGTGAGCCTCCTAAAATTGT 8 75 1 TGGTGGAATTCTGGTGCCCCGGCCGGGATTTGAACCC 8 135 1 CCGGCCGGGATTTGAACCCGGGGCGCGGGCTCGAAAG 8 153 1 CTCGAAAGGCCCGCATGTTTGACCGGGCTACACCACC 8 182 1 * ** * ***** * MAP Score: 2.2091 Motif 20 AATATGAATGCCGACAGCGAGGGTACAATCCCTC 2 98 1 CTCGGTCTACCCGCCCCCGCAAGGTGTTCGGGTT 2 139 1 TGTGCTCACGCCGAGCCCACAGGGCCGGTGCATC 2 185 1 CAGGGCCGGTGCATCCGCCCGCGGGATCAATGAC 2 204 1 CCCGCGGGATCAATGACCGCCGGGTCTCTGTTGC 2 221 1 TCCAGTTACTGCATCCGCCCTGGTAACCCCAGGT 6 120 1 TTGGTGGAATTCTGGTGCCCCGGCCGGGATTTGA 8 134 1 GGCCTTTCGAGCCCGCGCCCCGGGTTCAAATCCC 8 159 0 GTTTGACCGGGCTACACCACCGGGGCGCCCAATA 8 198 1 ** **** * *** MAP Score: 1.62233 Motif 21 GCTCCATCACCTGGAAAAGTTTTG 0 0 1 GGATGACGAGCCTTGCCCAGCCTGAAAGGTGATG 2 22 0 CCTCGCAGGGGCTCGGTCTACCCGCCCCCGCAAG 2 128 1 AGCACACCCCGCTCATCGAACCCGAACACCTTGC 2 157 0 GGATGCACCGGCCCTGTGGGCTCGGCGTGAGCAC 2 186 0 CCACAGGGCCGGTGCATCCGCCCGCGGGATCAAT 2 201 1 GAGACCCGGCGGTCATTGATCCCGCGGGCGGATG 2 215 0 ATGACCGCCGGGTCTCTGTTGCCGGCCTACAGCA 2 233 1 CCCTAACCATGCTCCACCACCTTCTTGGGATTTA 6 218 1 CAATCTCCCACCTCTATCTTCTTCTAGTTTTAGC 7 13 1 ATGAATTTCAGTTCCATGATCTCCCTAGACGATG 7 84 1 GTGGAATTCTGGTGCCCCGGCCGGGATTTGAACC 8 137 1 CAAACATGCGGGCCTTTCGAGCCCGCGCCCCGGG 8 169 0 TTAAATTTTACCTCTGCCTTCCTCGACAAGTTTT 11 41 1 **** ** **** MAP Score: 1.02359