AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_operons024_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250171
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB2379	23	PAB2379
#1	PAB1182	31	PAB1182
#2	PAB1179	87	hypothetical protein
#3	PAB1176	78	PAB1176

Motif 1
        CAATCTTTTTTAGGTGACAGGG	0	2	1
ACATCTATTCAACTATTTGAGAAAAAATAT	2	17	1
ATTTGAGAAAAAATATTTTAAGCGAATTCA	2	31	1
ATACGGGGACAGATATGTGAATTCGCTTAA	2	48	0
CGTTGAGCATAAAGTTTTAATTTAATATCA	3	31	0
CTTTATGCTCAACGATTTGATTATCGTCCA	3	47	1
     TGTATAGCGTTTGGACGATAATCAA	3	63	0
          **********
MAP Score: 5.28297