AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_operons051_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944250892
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB1784	103	PAB1784
#1	hydB-2	148	PAB0638

Motif 1
TTCGGGTTTAAAAACGCTTTTTTATCTCGCT	0	12	1
ATTCTACTACAAAACCCTTTTCATTTTATCA	1	35	1
ATAGTTGTTAAAATCTCGTTTTGAAAATTCT	1	84	1
          ***** *****
MAP Score: 2.11976

Motif 2
  TTTTCGGGTTTAAAAACGCTTTTTTATC	0	8	1
TAATTAGAATTTTCAAAACGAGATTTTAAC	1	90	0
          **********
MAP Score: 0.180412