AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_operons067_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944251209
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB2147	166	PAB2147
#1	PAB1929	67	PAB1929

Motif 1
CTTGACATTTACCAATATCTCGAAGTGGTTA	0	28	1
CGAAGTGGTTAAAAGTATTTCCATGCTTTTT	0	48	1
AACATTTGAGAGAAAGATATCCGCAACCCTT	0	96	0
GCTCGATACTATAAATATTTAATGGTTTAGA	0	129	0
TATCGAGCCCAAAAGTACCTCGTT       	0	152	1
ACTGTTTTGCACAAGGATTAAATTCAAGCA 	1	9	0
          * *********
MAP Score: 1.35698

Motif 2
CGAAGTGGTTAAAAGTATTTCCATGCTTTTT	0	48	1
TCTTTCTCTCAAATGTTCATCTAAACCATTA	0	110	1
TATCGAGCCCAAAAGTACCTCGTT       	0	152	1
          ******** **
MAP Score: 0.757761