AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_profile006_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944251503
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB1968	32	PAB1968
#1	PAB1967	51	hypothetical protein
#2	PAB1784	103	PAB1784
#3	PAB7309	48	hypothetical protein
#4	PAB0810	22	hypothetical protein
#5	bchP-like	90	PAB1059
#6	PAB1240	94	hypothetical protein

Motif 1
TTACGGGTATCCTTTTAAATGTAATCCTGA	1	20	1
TCGCTGTTCAACTCTTAACTGGGGAACAAA	2	38	1
TAATTAGGCCACTCTAAAATTTAAAGGTTT	6	25	1
GGTTTAAGAAATTCTTAAATAACCTCTGCT	6	50	1
          **********
MAP Score: 1.04168