AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_profile021_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944251885
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB0144	89	PAB0144
#1	asnA-2	54	PAB0145
#2	PAB2195	52	PAB2195
#3	PAB1576	48	PAB1576

Motif 1
TGGATGTCATAACGTTTATAAGATTATCTTA	0	19	1
GCATTTCCACAATTTTTTTAACCTTTCGACA	1	10	1
GGTAGCTGAAAACCTTTTTAAGGTTCACCTA	2	22	0
GAGGGAGGTAAACTATTATAAATCATCCTCA	3	21	0
          *** *******
MAP Score: 4.73986

Motif 2
TGGATGTCATAACGTTTATAAGATTATCTTA	0	19	1
CAATTTTTTTAACCTTTCGACAATCCTTTAC	1	19	1
GACAATCCTTTACCTTTGGGGTTCAAG    	1	37	1
GGTTCACCTATACCTTTAGCCG         	2	1	0
GGTAGCTGAAAACCTTTTTAAGGTTCACCTA	2	22	0
AATCATCCTCAAACTTCCTACC         	3	1	0
TATAATAGTTTACCTCCCTCCGTATT     	3	32	1
          ******* ***
MAP Score: 3.46709