AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_sum_all027_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944253443
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB2379	23	PAB2379
#1	PAB1182	31	PAB1182
#2	PAB1179	87	hypothetical protein
#3	PAB1176	78	PAB1176

Motif 1
  TCCATGAACATCTATTCAACTATTTGAGAAAAAATATTTT	2	8	1
TATACGGGGACAGATATGTGAATTCGCTTAAAATATTTTTTC	2	37	0
CTCATTCAGGCATGAATGATATTAAATTAAAACTTTATGCTC	3	15	1
ACTTTATGCTCAACGATTTGATTATCGTCCAAACGCTATACA	3	46	1
          **   **   * **   *  **
MAP Score: 0.302022

Motif 2
ATGAACATCTATTCAACTATTTGAGAAAAA	2	13	1
AGATATGTGAATTCGCTTAAAATATTTTTT	2	38	0
CATGAATGATATTAAATTAAAACTTTATGC	3	25	1
ATGCTCAACGATTTGATTATCGTCCAAACG	3	51	1
          **********
MAP Score: 0.0164752