AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_sum_all045_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944254027
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aif1A	120	PAB2441
#1	PAB1013	68	hypothetical protein

Motif 1
CGACCCTCCTTCCAATCTTTCTCGCTTTTG	0	13	1
TCAAGGAGTATGCAAAAATTTTTAAAGTTT	0	54	1
CCACCTATGCTGAAAACTTTAAAAATTTTT	0	67	0
TCCTGATTTTTGCAAAAATTTTTCTATGGC	0	96	0
ACCTTTAAATTCCCAAGTTTGACGTTCATT	1	44	1
          **********
MAP Score: 4.15991

Motif 2
ACGACCCTCCTTCCAATCTTTCTCGCTTTTG	0	12	1
TCAAGGAGTATGCAAAAATTTTTAAAGTTTT	0	54	1
TCCTGATTTTTGCAAAAATTTTTCTATGGCC	0	95	0
TACCTTTAAATTCCCAAGTTTGACGTTCATT	1	43	1
          ******* ***
MAP Score: 3.83763