AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_sum_all058_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944254291
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB0239	60	hypothetical protein
#1	PAB2445	81	PAB2445

Motif 1
          TCATTACACCACTTATCTGAA	0	0	1
        AGTAATGCCCCCATTACTAAGTA	1	2	1
CATTACTAAGTAATGGTACCATTACTTAAAT	1	21	1
TATCCCCTACTAATGTTCCCCTCGGTTCATA	1	57	0
          ***** *****
MAP Score: 4.97784

Motif 2
        AGTAATGCCCCCATTACTAAGTAA	1	2	1
CATTACTAAGTAATGGTACCATTACTTAAATA	1	21	1
TTAAATATGTTTATGAACCGAGGGGAACATTA	1	46	1
TATCCCCTACTAATGTTCCCCTCGGTTCATAA	1	56	0
          *****  *****
MAP Score: 4.61733