AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_sum_all060_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944254294
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB0066	95	PAB0066
#1	rfcS	27	PAB0068
#2	PAB1727	83	hypothetical protein
#3	trpS	173	PAB1111

Motif 1
CCTTCATAATGATTTTGGCGGAATGTTATATTTA	0	20	0
        AAAACTAGGGAAAATTGGCGTTTAAT	2	2	1
CGTTTAATAAAGGTTTGGTAAAATGATATATATG	2	28	1
GTAAAATGATATATATGGTTTAATTTAAGTTAGA	2	45	1
TATTAACTTGACTTTGGGTTAAATACCTATCGCT	3	29	1
TAATTGATCCATCTAGGGGGGATTCTGT      	3	155	1
          *  *****  ****
MAP Score: 2.77477