AlignACE 3.0 10/20/99
AlignACE2 -i PA/PA_sum_all079_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944254635
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PAB0040	23	hypothetical protein
#1	PAB2073	68	PAB2073
#2	PAB2380	52	hypothetical protein
#3	PAB1118	28	hypothetical protein

Motif 1
GGGTTTTCATGAAGAAAAGTTAGGTGATCCA   	1	7	0
AGAGCGTTAAGACCAAAGTTTAAGAGGGTTTTCA	1	32	0
      CGGAGAATCTAGCTTAGATCACTTTTTA	2	4	1
        CGGAAATCAGATAAGGAAGGTGTTTT	3	2	1
          ***   ** *****
MAP Score: 1.76681