AlignACE 3.0 10/20/99 AlignACE2 -i PH/PH_fusions001_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944254831 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PH0154 55 248aa long hypothetical transport system protein #1 PH0194 60 375aa long hypothetical multiple sugar-binding transport ATP-binding protein #2 PH0206 132 544aa long hypothetical protein #3 PH0502 151 641aa long hypothetical protein #4 PH0503 35 330aa long hypothetical oligopeptide transport system permease protein AppB #5 PH0807 174 597aa long hypothetical oligopeptide binding protein APPA #6 PH0808 41 323aa long hypothetical oligopeptide transport permease protein APPB #7 PH0882 127 237aa long hypothetical ABC transporter ATP-binding protein #8 PH0914 175 122aa long hypothetical protein #9 PH1228 300 325aa long hypothetical protein #10 PH1410 117 332aa long hypothetical dipeptide transport system permease protein dppB #11 PH1736 70 580aa long hypothetical ABC transporter ATP-binding protein #12 PH1737 137 237aa long hypothetical protein #13 PH1849 34 318aa long hypothetical ATP-binding transport protein #14 PH1961 198 349aa long hypothetical oligopeptide transport system permease protein appB Motif 1 TTCTCATGCAATTTTATTTTTAAGAAGAG 1 41 1 TTTTCATTATTTTACCTATTCT 2 0 1 TACATTGGACTTTTCAATTTTAGTGTACTTTC 2 82 1 GTTACTGTAAATTTGAATGTTTTTATAACTTC 3 29 1 GCTCTCTCTTTTATTATTTTGTTGGGGGG 4 7 1 CGAAGCGTATATTTAATTTTTATGGATCGGAA 5 111 0 TTACCCCCAATTTTAAATCTTAAAACTATGTA 5 146 0 TTTTTATTTTTATTCCCCTTTT 6 0 1 ATGAAAATAATTTTAAATGATTGAATACTAGC 7 20 0 TGTGAAGGGAATTTAAAATTTTCTGGACAATT 7 86 0 ATAATCTTTTTAAATTTTAAGAGAGTGG 9 6 1 GGGCCCCTGGTTTTGAACTTTTTTCCTAATTT 9 245 1 TTTGCCTTTTTTCAAACTTTTTCAAACAAA 12 8 1 CAGATATATTTTTTAAATATTTTGTTTGAAAA 12 28 0 CACTTTTTAAACTTTGTAAATTCCT 13 3 1 TTCTCCTTGATTTTTAAATTTTAGAAACCCTT 14 29 1 **** *** *** MAP Score: 20.045 Motif 2 AGGAATTTACAAAGTTTAAAAAGTG 13 5 0 TTATAATCAAAAAGTTTATATAATGTGAAC 3 103 1 CCACTCTCTTAAAATTTAAAAAGATTAT 9 8 0 AAGGGTTTCTAAAATTTAAAAATCAAGGAG 14 31 0 AATTGTCCAGAAAATTTTAAATTCCCTTCA 7 86 1 TACTTAACAGAATGTTTTTAAGTTAACAAT 0 24 1 TGTAAATTTGAATGTTTTTATAACTTCCCT 3 34 1 TTTTCCAGGAAATGTTTTTAGTCTTCTCAT 1 18 1 TTTCAAACAAAATATTTAAAAAATATATCT 12 29 1 TTTAAACACCAAAATTTTTATTTATGCGAT 10 44 1 AATTAGGAAAAAAGTTCAAAACCAGGGGCC 9 246 0 TTAACCGACAAATATTTATAGTAACTAAAA 11 34 1 TTTGTTTGAAAAAGTTTGAAAAAAGGCAAA 12 10 0 TGAAAAAGATAATGTTCAAACTTGTTCCTT 14 148 1 TTCGACGTACATAGTTTTAAGATTTAAAAT 5 139 1 GTGATATGTTAAAATTTAACCCTATATTTT 5 43 0 AGCAATGTTTTTCCAGGAAATGT 1 3 1 ACATATGAAAATAATTTTAAATGATTGAAT 7 26 0 ATAGTAACTAAAAGTTTAATCCCTTTAGT 11 51 1 ********** MAP Score: 19.2122 Motif 3 GAGAAAACTAAAGGGGAGGAGAAA 14 1 0 TTCGTCCTCTAAGGGGGGTGAAAG 2 118 1 TGAGGATTAAAAGGGGGGATTAATTCAGATTTA 3 64 0 AAGAATGTACAAGGAGGGGCAAAT 10 103 1 CAACAAAGAAAAGGGGAATAAAAATAAAAA 6 7 0 CAAGGAGATTAAAATAACTGCAGA 12 123 0 GCAATAAAGAAAAGAGAGAAGAAAGATTA 10 6 0 AACTAACGAGAAAGAGAGCTTAAGAGAAGGGTT 14 54 0 ATTCAGATTTAAGGGAAGTTATAAAAACATTCA 3 42 0 ATGTCATGTGAAGGGAATTTAAAATTTTCTGGA 7 91 0 TTTAAAAATCAAGGAGAAAACTAAAGGGGAGGA 14 14 0 GCCCAAGTTTAAGGGGCACCTAAAGCTCCTAAT 8 109 1 ATAATAATCTAAAAGGAGAGAAA 11 0 0 TTTTAAATTTTAAGAGAGTGGAAATCCCATGCC 9 17 1 ******** ** MAP Score: 17.6819 Motif 4 TAATTCGTCCTCTAAGGGGGGTGAAAG 2 115 1 TTACAGTAACATGATGAGGGGGAGATTGA 3 4 0 TAATTCAGATTTAAGGGAAGTTATAAAAACATTCA 3 42 0 GCTTGAGGATTAAAAGGGGGGATTAATTCAGATTT 3 65 0 TTTTATTATTTTGTTGGGGGGAATATT 4 18 1 CCCCTTTTCTTTGTTGGAGGTGAGAGA 6 24 1 CTTTTTAAATTTTAAGAGAGTGGAAATCCCATGCC 9 15 1 AACAAGAATGTACAAGGAGGGGCAAAT 10 100 1 AGAGGCAAAGTATATGGGAGGTGTACTTAGTTGGA 12 72 1 AGGAGAAAACTAAAGGGGAGGAGAAA 14 1 0 AAGTAAGATATATAAGGTAGTTTTACAAGCTTGAA 14 117 1 AACTGGAATGTTCAGGAGGGTGTGAG 14 182 1 ** * ****** * MAP Score: 10.6576 Motif 5 GGAAATGTTTTTAGTCTTCTCATGCAATTTT 1 25 1 CTTTCACCCCCCTTAGAGGACGAA 2 118 0 TCAATCTCCCCCTCATCATGT 3 0 1 TAAATCTGAATTAATCCCCCCTTTTAATCCT 3 64 1 AATATTCCCCCCAACAAAATAA 4 23 0 TTTTTATTTTTATTCCCCTTTTCTTTGTTG 6 9 1 TCTCTCACCTCCAACAAAGAA 6 30 0 TTTCTGGACAATTTTGCCCTCACACTCTTGG 7 68 0 GGCCGTAATAATAACCTCTTCCTGGGCCTCT 9 63 0 TAATCTTTCTTCTCTCTTTTCTTT 10 3 1 TCTCTTTTCTTTATTGCCCTTATTTAAACAC 10 22 1 ATTTGCCCCTCCTTGTACATTC 10 105 0 TTTCTCTCCTTTTAGATTATT 11 0 1 AACTAAAAGTTTAATCCCTTTAGT 11 56 1 TCCCATATACTTTGCCTCTTCACATAACATT 12 60 0 TGCAGTTATTTTAATCTCCTTG 12 125 1 TTTCTCCTCCCCTTTAGTTTT 14 0 1 *** ******* MAP Score: 8.89401 Motif 6 TAATCCTCAAGATTGTTAAC 0 45 0 GAAAGTACACTAAAATTGAAAAGTCCAATG 2 84 0 CATGTTACTGTAAATTTGAATGTTTTTATA 3 26 1 TAACTTCCCTTAAATCTGAATTAATCCCCC 3 54 1 TCCCCCCTTTTAATCCTCAAGCTAATTATA 3 78 1 TATAATTAAGACTCAATTTTTATAAG 3 135 0 AGTGATATGTTAAAATTTAACCCTATATTT 5 44 0 TGAGAATCTATGATCTTCAATGCCAAATTC 5 84 1 CCCCAATTTTAAATCTTAAAACTATGTACG 5 144 0 CGATCTAGGCTAGTATTCAATCATTTAAAA 7 12 1 CATATGAAAATAATTTTAAATGATTGAATA 7 25 0 TCATATGTTTTAGTTTTCAACCAAGAGTGT 7 48 1 AATTGTCCAGAAAATTTTAAATTCCCTTCA 7 86 1 CTAAAGCTCCTAATACTGAAGCTCCTGGAA 8 128 1 TCCACTCTCTTAAAATTTAAAAAGATTAT 9 9 0 TAATTAAGTATGATGCTTAAGAAAATTAGG 9 269 0 TGCGATAATATAATTCTCAAACGATGTTAT 10 68 1 GAAGGGTTTCTAAAATTTAAAAATCAAGGA 14 32 0 TTGAAAAAGATAATGTTCAAACTTGTTCCT 14 147 1 ********** MAP Score: 3.07077 Motif 7 CGGTTAGATATTAATTTCTCTCAGAATAGGTA 2 22 0 CTTTCACCCCCCTTAGAGGACGAA 2 118 0 TCAATCTCCCCCTCATCATGTT 3 0 1 GAATGTTTTTATAACTTCCCTTAAATCTGAAT 3 43 1 TAAATCTGAATTAATCCCCCCTTTTAATCCTC 3 64 1 TTATATAATGTGAACTTCTTATAAAAATTGAG 3 118 1 TTTTTATTTTTATTCCCCTTTTCTTTGTTG 6 8 1 CCAGAAAATTTTAAATTCCCTTCACATGACAT 7 92 1 GTTAAAAGCATAAACTTCTCTCT 8 1 0 AGCTCCTGGAAGAAAACCCCCTGCACGGATAT 8 147 1 CTGGGCCTCTTCCAAATCCTCTTGGCATGGGA 9 41 0 TGTTCCTAGTTGCAGCTCCCTACGTCATAGCC 9 157 1 TAATCTTTCTTCTCTCTTTTCTTTATTG 10 6 1 TAACTAAAAGTTTAATCCCTTTAGT 11 55 1 TCCAACTAAGTACACCTCCCATATACTTTGCC 12 75 0 TTAAACTTTGTAAATTCCTTTCATATTG 13 16 1 TTTCTCCTCCCCTTTAGTTTTCT 14 1 1 TTTAAATTTTAGAAACCCTTCTCTTAAGCTCT 14 41 1 AACCCTTCTCTTAAGCTCTCTTTCTCGTTAGT 14 54 1 TTCAAGCTTGTAAAACTACCTTATATATCTTA 14 120 0 * ** ******* MAP Score: 0.620759 Motif 8 CGTCCTCTAAGGGGGGTGAAAG 2 120 1 ATTATTTTGTTGGGGGGAATATT 4 22 1 GATTTAAAATTGGGGGTAATCTTAG 5 159 1 ACCAAGAGTGTGAGGGCAAAATTGTCCAGA 7 67 1 GGTGTTTAAATAAGGGCAATAAAGAAAAGA 10 24 0 AATGTACAAGGAGGGGCAAAT 10 106 1 ********** MAP Score: 0.145572