AlignACE 3.0 10/20/99 AlignACE2 -i PH/PH_operons003_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944255289 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PH0069 52 456aa long hypothetical protein #1 PH0378 56 318aa long hypothetical UDP-glucose 4-epimerase #2 PH0379 133 385aa long hypothetical protein #3 PH0396 58 321aa long hypothetical protein #4 PH0401 222 294aa long hypothetical glycosyl transferase #5 PH0412 99 110aa long hypothetical protein #6 PH0413 47 356aa long hypothetical glucose-1-phosphate thymidylyltransferase #7 PH0421 109 432aa long hypothetical lipopolysaccharide O-side chain biosynthesis protein (O-antigen transpoter) #8 PH0434 185 336aa long hypothetical protein #9 PH1022 300 416aa long hypothetical sugar-phosphate nucleotydyl transferase #10 PH1037 129 142aa long hypothetical protein #11 PH1209 45 259aa long hypothetical protein #12 PH1217 127 216aa long hypothetical alkyl hydroperoxide reductase #13 PH1218 82 410aa long hypothetical phosphoglycerate kinase #14 PH1515 149 391aa long hypothetical chlorohydrolase #15 PH1617 122 336aa long hypothetical UDP-N-acetylglucosamine 2-epimerase #16 PH1618 246 418aa long hypothetical UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase #17 PH1742 55 306aa long hypothetical UDP-glucose 4-epimerase #18 PH1843 183 310aa long hypothetical protein Motif 1 TAAATTTTCAGAAAGGTTAATAAGATTAAGGAT 0 24 0 TAACCTTTCTGAAAATTTAAAAAA 0 38 1 CAAATCCTAAGATAATGTTAAAAATTTTAGTGC 3 22 0 AGTGGTTCTCGAAAACCTTAAATATCATTTTAT 5 53 1 GATTTAACGAGAAACTTTTAAAAGAGGGATTTT 8 74 0 GATTTCTGTAGAATAAATTAAAACCTTCTGTGA 8 115 1 AGGTTGAAGGGAAAGGGATAAAAAGGTTTAGTT 8 155 0 CTAACGGATTGAAAACCTTATAAAGGGGAACGG 9 260 1 GATCATGATCGAAAAGTTTATAAGTTCGAACCA 12 63 1 GAAAGGATGAGAAATTTATATAAATTAACAAAG 16 72 0 ATTAAAAGGAGATAGCCATAAAATGCATCTGAA 16 102 0 GATAGGACAAGAAATCCTTAAAATTAAGCGTTA 16 200 1 TACCCTCCCCGAAATCGTTTAAATGCCTCAAAT 17 10 1 ATCAAACATCGAAATCTTTATAAAGGGAAAATA 18 35 0 CATCGAAGGGGAAATCTCTAAAAGAGCTATAAT 18 126 1 **** ****** MAP Score: 20.93 Motif 2 ATCTTATTAACCTTTCTGAAAATTTAAAAAA 0 31 1 TTTTATCCTATCTCGATAAATTTTTATTTCA 6 6 1 GATTGCACCTCGCTCAAAAATTTGATGAAATA 7 87 0 TCTTAAAATCCCTCTTTTAAAAGTTTCTCGTTAAA 8 70 1 AATATAAAAACCTTATTTGAAACTTTGA 14 3 0 AGTCAGATCACCTAATTTTAGAATTACAGTTTAAT 14 35 0 TTATTTCAGGCCTAGTTCCAAATATTACTATTGGC 15 11 0 AATTATTTTCCCTTTATAAAGATTTCGATGTTTGA 18 32 1 CCCGAACTTACCTCTTTGGAAAGTTTTTATTCATA 18 77 1 GAGATTTCCCCTTCGATGTAAATTTATGAGAGTAT 18 109 0 ACTGTACCCTCCTGTATGGAAAGTTGGGATAAATT 18 156 0 *** * * *** ** MAP Score: 14.9944 Motif 3 ATAGAGCTGGAGAAAGTCTTGAATTCGAGG 2 68 1 GTAGAAGGTTTTCCCAGTCTTT 2 121 0 ATTCCTCATGATATAGTTTTAGCGATGAAT 4 92 1 AAAATGATATTTAAGGTTTTCGAGAACCAC 5 54 0 TCCTATCTCGATAAATTTTTATTTCACACT 6 15 1 GAGGATATTAAGAAGTTTTTGACTTAAAAG 7 10 1 TGATTTAACGAGAAACTTTTAAAAGAGGGA 8 78 0 ACTTTATCACAGAAGGTTTTAATTTATTCT 8 124 0 ATGAAGCCAAAGAAGTTCTTTTATTCTTGG 9 42 0 AAAGGAGTTAATCAAGTTTTCAGGGGAAGA 9 116 0 GTTCCCCTTTATAAGGTTTTCAATCCGTTA 9 261 0 GTTCGAACTTATAAACTTTTCGATCATGAT 12 64 0 AAAGTTTCAAATAAGGTTTTTATATTAAAC 14 12 1 TTTTCCCTTTATAAAGATTTCGATGTTTGA 18 37 1 TTACCTCTTTGGAAAGTTTTTATTCATACT 18 84 1 ********** MAP Score: 14.293 Motif 4 CGGAAGCTCCCTTCATCCTTAATCTTATTAACCTTTCT 0 7 1 AATTCAAGACTTTCTCCAGCTCTATCCTTCCTTAGTATAAT 2 52 0 GAATTCGAGGTTGCTCTTACTCTATGGGCGTAGAAAGACTG 2 88 1 TCCCATGTAATTGCTTCAACTTAAAAATAACTTTTAAAGAG 4 144 1 AAGCTAAAATTACCTCCAGTTATACTACTCTCTGTAGGTTA 8 29 1 CATACTCTTTTATCTTCAACTCACCCTCGACCCTCTCCCAG 9 69 1 AAAACTTGATTAACTCCTTTAAAATGGACTTTGCAATTGAC 9 126 1 TAAATCTCCTGTACTCCTCCCTAAGTGACATAAGTTATCCT 9 192 1 TATCCTTATTTAACTTCTTCTCTAACGGATTGAAAACCTTA 9 239 1 ATTTTTCCTTCTTTTGAATCTTACCTAGCTTATCC 12 4 1 TTCGATCTCCTCCCATATTTTGTTTCCATTATAA 12 103 0 TTTCTATTCTTATCTTCCCCTATATTGGCATAATATTCTTA 13 19 1 TATTTTATCTCCCTCTATCAGGATATCAGCCCTAGT 14 123 0 ATAATAAAGCTCTCTCCAGTTATAAGGGCCTTCCTGGAGAA 15 42 1 GAGAAGGGTATTTCTCCAATTCTAGTCCACTCGGGTCAGCA 15 78 1 * **** ** ** * MAP Score: 10.7526 Motif 5 TTCTCCAGCTCTATCCTTCCTTAGTATAATGG 2 50 0 TCGAGAACCACTATCCTTAAATCAATAGAGAA 5 33 0 TTACCTCCAGTTATACTACTCTCTGTAGGTTA 8 38 1 TCTCTGTAGGTTATCTTAAAATCCCTCTTTTA 8 57 1 CGACCTCCTTATCTTAATTTCCCCGATACT 9 8 1 TCATACTCTTTTATCTTCAACTCACCCTCGAC 9 68 1 GTGACATAAGTTATCCTTCTCATTATCCTTAT 9 216 1 ATCCTTCTCATTATCCTTATTTAACTTCTTCT 9 228 1 ATTTTTCCTTCTTTTGAATCTTAC 12 2 1 CTTACCTAGCTTATCCTCACCTTCAACTATTC 12 29 1 CTTTCTATTCTTATCTTCCCCTATATTGGCAT 13 18 1 CATAATATTCTTAACCTTCGTTTTTTATTGAA 13 47 1 AATAAGGTTTTTATATTAAACTGTAATTCTAA 14 21 1 TATTTTATCTCCCTCTATCAGGATAT 14 133 0 GAGCTATAATTTATCCCAACTTTCCATACAGG 18 149 1 ******* * ** MAP Score: 9.36621 Motif 6 AGAGAAGTACAAGATTTGAGGGAACCAGT 5 8 0 ACCTCGCTCAAAAATTTGATGAAATACTTAG 7 82 0 CGGGGAAATTAAGATAAGGAGGTCG 9 4 0 TGGGATGAAAATTAGGAGGTATCTAGTT 10 7 1 GTTGAAAGATTAAAAGTTGCAAATTA 11 29 0 GTTTTTTATTGAAATTTGGTGGTGAA 13 66 1 CTGTAATTCTAAAATTAGGTGATCTGACTTG 14 41 1 TATTTACCCTGAAATTAAAAGGAGATAGCCA 16 117 0 AGAAATCCTTAAAATTAAGCGTTAGTCTAAT 16 209 1 CTAATTATTAAAAATTTGAGGCATTTAAACG 17 25 0 CAAATTTTTAATAATTAGGGGCCCCAT 17 38 1 ********* * MAP Score: 8.60892 Motif 7 TTTTTTAAATTTTCAGAAAGGTTAATAAGATTAAGGA 0 25 0 TATAATGGCCATTATAATAATCACCGTTATAATAATCGCGA 2 17 0 TGATAAAGAGTAGCACTAAAATTTTTAACATTATCTT 3 6 1 TAATTGCTTCAACTTAAAAATAACTTTTAAAGAGGATATTG 4 151 1 AACCTTAAATATCATTTTATGAAATTTTACATCAAAATATG 5 66 1 TTAATACTCTAGTGTGAAATAAAAATTTATCGAGATAGGAT 6 14 0 GAGGATATTAAGAAGTTTTTGACTTAAAAGCG 7 1 1 CTAAGAGAGCAGATAATACAGCAATTTTAAAAAGCTAAGTA 7 48 1 TAAAAAGCTAAGTATTTCATCAAATTTTTGAGCGAGGTGCA 7 75 1 CTCCAGTTTGATTTAACGAGAAACTTTTAAAAGAGGGATTT 8 75 0 CTTCTGTGATAAAGTCAACTAAACCTTTTTATCCCTTTCCC 8 139 1 GTCCATTTTAAAGGAGTTAATCAAGTTTTCAGGGGAAGAAC 9 114 0 ACTATTCCTGATCATGATCGAAAAGTTTATAAGTTCGAACC 12 54 1 ACCAAATTTCAATAAAAAACGAAGGTTAAGAATATTATGCC 13 45 0 TCAAAGTTTCAAATAAGGTTTTTATATTAAACTG 14 3 1 TACCCTCCCCGAAATCGTTTAAATGCCTCAAA 17 1 1 * * * ** **** * MAP Score: 8.49997 Motif 8 GTCGCGATTATTATAACGGTGATTATTATAAT 2 16 1 ACGGTGATTATTATAATGGCCATTATACTAAG 2 31 1 GTTGAAGCAATTACATGGGAGAACGTAAACAT 4 132 0 TAATTTTAGCTTACAATAGGGAGGGCACTTC 8 9 0 CGAGAAACTTTTAAAAGAGGGATTTTAAGATA 8 68 0 ATTAACTCCTTTAAAATGGACTTTGCAATTGA 9 134 1 ATTGAAAACCTTATAAAGGGGAACGGTTTAAG 9 267 1 CCATATTAGTTTATAATGGAAACAAAATATGG 12 93 1 CTCTCTCCAGTTATAAGGGCCTTCCTGGAGAA 15 51 1 ATCGAAATCTTTATAAAGGGAAAATAATTTAG 18 29 0 ****** ** ** MAP Score: 7.19428 Motif 9 CCTAGCTTATCCTCACCTTCAACTATTCCTGATC 12 33 1 CCTCGCCCCTAAGCAAATCCTAAG 3 44 0 CAGTAGGGTTCTTCCCCTGAAAACTTGATTAACT 9 107 1 CCTTATTTAACTTCTTCTCTAACGGATTGAAAAC 9 242 1 CTATTCTTATCTTCCCCTATATTGGCATAATATT 13 22 1 GATTGCACCTCGCTCAAAAATTTGATGAAAT 7 88 0 TACCCTCCCCGAAATCGTTTAAATGCC 17 3 1 CGGAAGCTCCCTTCATCCTTAATCTTATTAACCT 0 10 1 TAAGATAAGGCCTCCCTTTAATAGAATTGACAAG 14 68 0 CACCCTCGACCCTCTCCCAGTAGGGTTCTTCCCC 9 90 1 GAGAAATACCCTTCTCCAGGAAGGCCCTTATAAC 15 60 0 TCTTAAAATCCCTCTTTTAAAAGTTTCTCGTTAA 8 70 1 CAACCTCAAGCGTCTTCTTTAATGCCCCATAGCG 4 32 0 CCCGAACTTACCTCTTTGGAAAGTTTTTATTCAT 18 77 1 CTTTTTATCCCTTTCCCTTCAACCTATGACAA 8 163 1 AATCTCCTGTACTCCTCCCTAAGTGACATAAGTT 9 194 1 ATTTTTCCTTCTTTTGAATCTTACCTAGCTT 12 7 1 AACTTGATTAACTCCTTTAAAATGGACTTTGCAA 9 128 1 CGACCTCCTTATCTTAATTTCCCCGATACT 9 6 1 AATATAAAAACCTTATTTGAAACTTTGA 14 4 0 ATCTTATTAACCTTTCTGAAAATTTAAAAAA 0 31 1 **** *** ** * MAP Score: 6.8192 Motif 10 TGTTTACGTTCTCCCATGTAATTGCTTCAA 4 133 1 TTTTTATCCCTTTCCCTTCAACCTATGACA 8 164 1 TTATCTTAATTTCCCCGATACTTTCCAAGA 9 18 1 AGTAGGGTTCTTCCCCTGAAAACTTGATTA 9 108 1 CCTTAAACCGTTCCCCTTTATAAGGTTTTC 9 270 0 GCCATCAATACTCCCATGAACGGGATTAGC 10 73 0 CTAGCTTATCCTCACCTTCAACTATTCCTG 12 34 1 TATTCTTATCTTCCCCTATATTGGCATAAT 13 23 1 AAGATAAGGCCTCCCTTTAATAGAATTGAC 14 71 0 AATTCCTTATTTACCCTGAAATTAAAAGGA 16 125 0 TACCCTCCCCGAAATCGTTTAAAT 17 4 1 ACTAAATTATTTTCCCTTTATAAAGATTTC 18 28 1 TTTTAGAGATTTCCCCTTCGATGTAAATTT 18 119 0 TTATCCCAACTTTCCATACAGGAGGGTACA 18 159 1 ********** MAP Score: 5.89292 Motif 11 GGTTAATAAGATTAAGGATGAAGGGAGCTTCCG 0 10 0 AACTTATGTCACTTAGGGAGGAGTACAGGAGAT 9 195 0 ATGGAAACAAAATATGGGAGGAGATCGAA 12 108 1 CAGGCAATTAAGTTAGGAACTAGATACCTCCTA 10 22 0 TTGCTCTTACTCTATGGGCGTAGAAAGACTGGG 2 98 1 TGGCCATTATACTAAGGAAGGATAGAGCTGGAG 2 47 1 CTTAGGATTTGCTTAGGGGCGAGG 3 44 1 AAGCGTTAGTACTAAGAGAGCAGATAATACAGC 7 37 1 TTTCAGGGTAAATAAGGAATTAGCAAGCATATT 16 134 1 TGGGATGAAAATTAGGAGGTATCTAGTTCCTA 10 9 1 GGGAAATTAAGATAAGGAGGTCG 9 0 0 ATATTATGCCAATATAGGGGAAGATAAGAATAG 13 22 0 CCAATAGTAATATTTGGAACTAGGCCTGAAATA 15 12 1 GCTATGGGGCATTAAAGAAGACGCTTGAGGTTG 4 33 1 * ****** * ** MAP Score: 4.54983 Motif 12 TAAGATTAAGGATGAAGGGAGCTTCCG 0 5 0 AGGTCTAGTGGGTTAAGGGATATCC 1 41 1 CTTCTCTATTGATTTAAGGATAGTGGTTCTCG 5 32 1 TCTCCAGTTTGATTTAACGAGAAACTTTTAAA 8 85 0 ATAGGTTGAAGGGAAAGGGATAAAAAGGTTTA 8 158 0 ACTGGGAGAGGGTCGAGGGTGAGTTGAAGATA 9 79 0 ACTTAGGGAGGAGTACAGGAGATTTAAGACCA 9 186 0 AAAGGGGAACGGTTTAAGGATAACATCAG 9 281 1 CTGATATCCTGATAGAGGGAGATAAAATA 14 130 1 *** ******* MAP Score: 4.03031 Motif 13 TAATAAGATTAAGGATGAAGGGAGCTTCCG 0 10 0 TATACTAAGGAAGGATAGAGCTGGAGAAAG 2 54 1 AGCAATTACATGGGAGAACGTAAACATCGA 4 129 0 TTTATCGAGATAGGATAAAA 6 0 0 AGCTTACAATAGGGAGGGCACTTC 8 4 0 TTGAAGGGAAAGGGATAAAAAGGTTTAGTT 8 155 0 TTGTCATAGGTTGAAGGGAAAGGGAT 8 169 0 AAATTAAGATAAGGAGGTCG 9 0 0 AGAACCCTACTGGGAGAGGGTCGAGGGTGA 9 89 0 TATGTCACTTAGGGAGGAGTACAGGAGATT 9 194 0 GGATAATGAGAAGGATAACTTATGTCACTT 9 214 0 AAACCTTATAAAGGGGAACGGTTTAAGGAT 9 272 1 GGAACGGTTTAAGGATAACATCAG 9 286 1 TGGGATGAAAATTAGGAGGT 10 0 1 GGATGAAAATTAGGAGGTATCTAGTTCCTA 10 12 1 TAAGATTCAAAAGAAGGAAAAAT 12 3 0 AAACAAAATATGGGAGGAGATCGAA 12 112 1 TATGCCAATATAGGGGAAGATAAGAATAGA 13 21 0 ATTCTATTAAAGGGAGGCCTTATCTTATAT 14 75 1 ATCCTGATAGAGGGAGATAAAATA 14 135 1 ATGCATCTGAAAGGATGAGAAATTTATATA 16 83 0 CTGAAATTAAAAGGAGATAGCCATAAAATG 16 110 0 ATTTACATCGAAGGGGAAATCTCTAAAAGA 18 121 1 TATGGAAAGTTGGGATAAATTATAGCTCTT 18 147 0 ********** MAP Score: 3.40068