AlignACE 3.0 10/20/99 AlignACE2 -i PH/PH_operons014_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944255942 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PH0161 143 242aa long hypothetical protein #1 PH0162 209 690aa long hypothetical protein #2 PH0164 300 160aa long hypothetical protein #3 PH0173 300 317aa long hypothetical protein #4 PH0175 200 162aa long hypothetical protein #5 PH0350 70 239aa long hypothetical protein #6 PH0918 55 377aa long hypothetical protein #7 PH0919 35 237aa long hypothetical protein #8 PH0921 300 121aa long hypothetical protein #9 PHS033 271 83aa long hypothetical protein #10 PH1252 69 267aa long hypothetical protein Motif 1 TAAAAATGGAGGATGTAGAATTGAGTATTTACAAAAC 0 62 1 TCCTTGAACTTGCTGAAGAGTTTAAAAAGAAGGGAAG 1 118 1 ACTTGCCTGTTTCCGTAGAACTCAGTAGTGTGGAAAG 3 51 1 CCACCTCCGTTTCCGTAGAACTTAGTAGTGTGGAAAG 3 118 1 GCAGCTGGGTTTCCGTAGAACTTAGTAGTGTGGAAAG 3 186 1 TCAATGGTGTTTCCGTAGAACTAAATAGTGCCTAAAT 3 253 1 ACAGCGTGTTTGAGGGAGAGCTAAGCAAGGCCCAACT 4 44 1 TAGATATTATTGAACAAGAACTTAGAATGTTAGTAAA 8 119 1 GTGGTGAAGACCTATGGAGGAATACGCC 9 1 1 AGGAAAGTGAGTGGGTAGATCTAGGGAAGTTCCTCCA 9 132 1 TAGAGGTTCATGAGGTAAAGCTAGGAAAGACC 9 249 1 ** * *** ** * * MAP Score: 21.4474 Motif 2 AATTTATATGTCTCCTTGGGTATAATTTTATTG 0 113 1 ACTGTAAATTTTTTCACCGATATCCTTCCAGTA 2 14 0 AGGTTCCCCTCTTTCAAGGGCCTCAACGTCTAT 2 212 0 CACTTGCCTGTTTCCGTAGAACTCAGTAGTGTG 3 50 1 CCCAGAGGTCTTTCCACACTACTGAGTTCTACG 3 64 0 ACCACCTCCGTTTCCGTAGAACTTAGTAGTGTG 3 117 1 ACTGGTTCTCTTTCCACACTACTAAGTTCTACG 3 131 0 GGCAGCTGGGTTTCCGTAGAACTTAGTAGTGTG 3 185 1 AGAGTTTGGCTTTCCACACTACTAAGTTCTACG 3 199 0 CTCTTCCTTGTTTTCAAGCTCCTTCTCAATGGT 3 228 1 CTCAATGGTGTTTCCGTAGAACTAAATAGTGCC 3 252 1 AGAGTTGGGCCTTGCTTAGCTCTCCCTCAAACA 4 50 0 ATTATCATCTCCACGGGGCTCTTATCCCTC 4 180 0 AAGGCGTATTCCTCCATAGGTCTTCACCAC 9 7 0 CATGGAGGAACTTCCCTAGATCTACCCACTCAC 9 138 0 CAGAACTTCCTTTTCCTCGTTCTCATACCTCTG 9 173 0 ***** *** ** MAP Score: 21.066 Motif 3 TCATCTTAGTAGGCATGAGCTTGAGGAGAAGTTTAGGACTC 2 163 1 CCATGAGCAGAGGTATGAGAACGAGGAAAAGGAAGTTCTGA 9 166 1 GCTTGAAATGAGGCTTAAGAGAATTGTAAAGGAAGATGATT 4 87 1 CTGTTTCCGTAGAACTCAGTAGTGTGGAAAGACCTCTGGGG 3 57 1 CCGTTTCCGTAGAACTTAGTAGTGTGGAAAGAGAACCAGTA 3 124 1 GGGTTTCCGTAGAACTTAGTAGTGTGGAAAGCCAAACTCTT 3 192 1 TAACGGGCTTAGGGAGGAGTTCAGGGATAAGAAGGGACTTC 2 46 1 CGTCGTTGGGAGGGATAAGAGCCCCGTGGAGATGATAAT 4 171 1 AACTTGCTGAAGAGTTTAAAAAGAAGGGAAGAGAAGATACT 1 124 1 GTGTCGGAAAGGGCGTCGGCAATTGGCGAAGTCTTTCCACA 3 12 0 ACGGAAACGGAGGTGGTGTTGTTGTGGCAAGTCATACCCCA 3 93 0 TTGTTCAATAATATCTAAACATTTTGGGAAGGTCACGAACT 8 95 0 GATGCTAGAAATACGGGATCTGTACGCTAAGGATCCAGAGG 2 94 1 *** * ** * *** MAP Score: 20.744 Motif 4 CTTTTTATTGAAAAAGGGAAAGCAACAGAT 0 7 0 CTAAAATCTAAAGTAAGAAAGGCTTTTTATTGA 0 29 0 TTGTTCCACGATATTGGAAAGCCGGTTCAGAGG 1 39 1 AGAGTTTAAAAAGAAGGGAAGAGAAGATACTGC 1 134 1 AGTGTGGAAAGACTTCGCCAATT 3 0 1 AGTTCTACGGAAACAGGCAAGTGTCGGAAAGGG 3 40 0 AGAACTCAGTAGTGTGGAAAGACCTCTGGGGTA 3 67 1 AGGTGGTGTTGTTGTGGCAAGTCATACCCCAGA 3 91 0 AGAACTTAGTAGTGTGGAAAGAGAACCAGTAGC 3 134 1 AGAACTTAGTAGTGTGGAAAGCCAAACTCTTCC 3 202 1 AGGAGCTTGAAAACAAGGAAGAGTTTGGCTTTC 3 218 0 TTTGAGGGAGAGCTAAGCAAGGCCCAACTCTAT 4 52 1 ATATCTAAACATTTTGGGAAGGTCACGAACTTC 8 93 0 AATAGCGATGGAATAGGAAAGTGAGTGGGTAGA 9 118 1 GAGTGGGTAGATCTAGGGAAGTTCCTCCATGAG 9 140 1 GAGGTATGAGAACGAGGAAAAGGAAGTTCTGAT 9 175 1 CATGAGGTAAAGCTAGGAAAGACC 9 257 1 ** ******* * MAP Score: 18.969 Motif 5 GGTTCAGAGGGCTAGTCTGTATAAAGGGGATCATAGTGAGC 1 62 1 AAGAGAAGATACTGCTAGGATTTATGAGAAGCTAGCCCTAT 1 152 1 AAAAATTTACAGTAACGGGCTTAGGGAGGAGTTCAGGGATA 2 34 1 TCATCTTAGTAGGCATGAGCTTGAGGAGAAGTTTAGGACTC 2 163 1 ATAGACGTTGAGGCCCTTGAAAGAGGGGAACCTCAGCCGAT 2 212 1 GTGTCGGAAAGGGCGTCGGCAATTGGCGAAGTCTTTCCACA 3 12 0 GTCTTTCCACACTACTGAGTTCTACGGAAACAGGCAAGTGT 3 49 0 CTCTTTCCACACTACTAAGTTCTACGGAAACGGAGGTGGTG 3 116 0 GGCTTTCCACACTACTAAGTTCTACGGAAACCCAGCTGCCA 3 184 0 ACCATTGAGAAGGAGCTTGAAAACAAGGAAGAGTTTGGCTT 3 220 0 TGATTTAGGCACTATTTAGTTCTACGGAAACACCATTGAGA 3 251 0 CCTCAAACACGCTGTTCTGTCTCCAAAAAAGGTAAGTTTTA 4 18 0 GCTTGAAATGAGGCTTAAGAGAATTGTAAAGGAAGATGATT 4 87 1 CGTCGTTGGGAGGGATAAGAGCCCCGTGGAGATGATAAT 4 171 1 CTATTCCATCGCTATTCCGTGGGTAAAGAACCATAGCTTTG 9 93 0 CCATGAGCAGAGGTATGAGAACGAGGAAAAGGAAGTTCTGA 9 166 1 AACTACCATTAGTCGTCAGAACTTAAAAAACTTATCATCCC 10 22 0 *** * * * **** MAP Score: 17.2982 Motif 6 AACGAGGAAAAGGAAGTTCTGATAGGCCCA 9 185 1 TTTCCACACTACTAAGTTCTACGGAAACGG 3 124 0 TTTCCACACTACTAAGTTCTACGGAAACCC 3 192 0 GGCTTAACAAGGGAACTTCTAGCATTAGGC 6 35 1 TGGGAAGGTCACGAACTTCATCCCCTAACA 8 82 0 TTTCCACACTACTGAGTTCTACGGAAACAG 3 57 0 AGGGATAAGAAGGGACTTCTCTATAAGATG 2 68 1 CTGCTCATGGAGGAACTTCCCTAGATCTAC 9 146 0 TGTAGAGGTAGCTAACTTCAATTCCTCTAA 9 54 0 TAAACTCTTCAGCAAGTTCAAGGAGAAAAT 1 112 0 AAATCCTAGCAGTATCTTCTCTTCCCTTCT 1 145 0 TTACTAACATTCTAAGTTCTTGTTCAATAA 8 125 0 TTATATTAGAAGTATGTTCAATTTTTTCTA 8 205 1 AGAAAATAGGGCTAGCTTCTCATAAATCCT 1 168 0 ********** MAP Score: 8.89261 Motif 7 CCACGATATTGGAAAGCCGGTTCAGAGGGCTAGTCTGTA 1 44 1 TTTTTAAACTCTTCAGCAAGTTCAAGGAGAAAATTAAAG 1 107 0 CGCTAAGGATCCAGAGGATGTTAAATGGGCCTATCTCCT 2 118 1 CGGTATAGACGTTGAGGCCCTTGAAAGAGGGGAACCTCA 2 208 1 GGTCTTTCCACACTACTGAGTTCTACGGAAACAGGCAAG 3 52 0 TCTCTTTCCACACTACTAAGTTCTACGGAAACGGAGGTG 3 119 0 TGGCTTTCCACACTACTAAGTTCTACGGAAACCCAGCTG 3 187 0 ATGATTTAGGCACTATTTAGTTCTACGGAAACACCATTG 3 254 0 TTTGGAGACAGAACAGCGTGTTTGAGGGAGAGCTAAGCA 4 32 1 GAACTTTGACCTTCACGTCGTTGGGAGGGATAAGAGCCC 4 156 1 TAATAGACGTTTTCAGAAGGTTATATTAGAAGTATGTTC 8 185 1 CGCCTTAGAAGAGTTGTTCGTTAGAGGAATTGAAGTTAG 9 34 1 TGAGAACGAGGAAAAGGAAGTTCTGATAGGCCCAATAAA 9 181 1 * ** *** * *** MAP Score: 7.95961 Motif 8 GAAATTTATATGTCTCCTTGGGTATAATTTTA 0 111 1 AGGCTTTAATTTTCTCCTTGAACTTGCTGAAG 1 104 1 TATCCCTGAACTCCTCCCTAAGCCCGTTACTG 2 43 0 TAAGAAGGGACTTCTCTATAAGATGCTAGAAA 2 73 1 CCTGGCGTATCATCTTAGTAGGCATGAGCTTG 2 154 1 GAGTCCTAAACTTCTCCTCAAGCTCATGCCTA 2 172 0 ACACCACCTCCGTTTCCGTAGAACTTAGTAGT 3 115 1 TTCTCAATGGTGTTTCCGTAGAACTAAATAGT 3 250 1 TTCTAATTTACATCTTCCCAGGAAAGAACTTT 4 131 1 ATTATCATCTCCACGGGGCTCTTATCC 4 183 0 CTAAGGCGTATTCCTCCATAGGTCTTCACCAC 9 10 0 TATTCCATCGCTATTCCGTGGGTAAAGAACCA 9 101 0 TCTAGGGAAGTTCCTCCATGAGCAGAGGTATG 9 151 1 * ***** **** MAP Score: 5.42684 Motif 9 TTTGATATCCCTCGGTGGTTTGTTCCACGATATTGGAAAG 1 20 1 TCTTTTTAAACTCTTCAGCAAGTTCAAGGAGAAAATTAAA 1 108 0 GTTTAGGACTCTCTTCGGTATAGACGTTGAGGCCCTTGAA 2 193 1 CAAGCTCCTTCTCAATGGTGTTTCCGTAGAACTAAATAGT 3 242 1 AATTTACATCTTCCCAGGAAAGAACTTTGACCTTCACGTC 4 135 1 GGCACTCTCAAGGTATCCCCATGAAGGCTTAACA 6 4 1 CGAACAACTCTTCTAAGGCGTATTCCTCCATAGGTCTTCA 9 14 0 GTCATAGAGGTTCATGAGGTAAAGCTAGGAAAGACC 9 245 1 *** ** * * * ** MAP Score: 5.22204 Motif 10 GGCATGAGCTTGAGGAGAAGTTTAGGACTC 2 174 1 GAAACACCATTGAGAAGGAGCTTGAAAACA 3 236 0 TAAAAAGAAGGGAAGAGAAGATACTGCTAG 1 140 1 AGTTCCTCCATGAGCAGAGGTATGAGAACG 9 159 1 CTGGTATAAATAAGGAGGGGATATAGTT 5 52 1 AGCAGAGGTATGAGAACGAGGAAAAGGAAG 9 171 1 ATAGACTTCATCAGAAGAGGAGACGTCATA 9 221 1 CTGAAGAGTTTAAAAAGAAGGGAAGAGAAG 1 130 1 GTAACGGGCTTAGGGAGGAGTTCAGGGATA 2 45 1 AGTTCTTTCCTGGGAAGATGTAAATTAGAA 4 131 0 AGAAGGAGCTTGAAAACAAGGAAGAGTTTG 3 224 0 TCTATGAGCTTGAAATGAGGCTTAAGAGAA 4 80 1 AGGAGTTCAGGGATAAGAAGGGACTTCTCT 2 60 1 CATAATGTTAGGGGATGAAGTTCGTGACCT 8 77 1 TGAGGCCCTTGAAAGAGGGGAACCTCAGCC 2 220 1 CTACGGAAACGGAGGTGGTGTTGTTGTGGC 3 106 0 ********** MAP Score: 3.41359 Motif 11 AAAATACTGGAAGGATATCGGTGAAAAAATTT 2 8 1 AAAATTTACAGTAACGGGCTTAGGGAGGAGTTCA 2 35 1 GGCAAGTGTCGGAAAGGGCGTCGGCAATTGGCGA 3 24 0 TCAGTAGTGTGGAAAGACCTCTGGGGTATGACTT 3 72 1 CATCTTCCCAGGAAAGAACTTTGACCTTCACGTC 4 141 1 ATAATGTTAGGGGATGAAGTTCGTGACCTTCCCA 8 78 1 GTGGTGAAGACCTATGGAGGAATACGC 9 3 1 GAAAGTGAGTGGGTAGATCTAGGGAAGTTCCTCC 9 134 1 **** ** ** ** MAP Score: 1.47465 Motif 12 TTGCTTTCCCTTTTTCAATAAAAAGCCTTT 0 15 1 AATTAAAGCCTTGCTCACTATGATCCCCTT 1 85 0 AGGCTTTAATTTTCTCCTTGAACTTGCTGA 1 104 1 GCAGTATCTTCTCTTCCCTTCTTTTTAAAC 1 137 0 TACTGTAAATTTTTTCACCGATATCCTTCC 2 18 0 TATCCCTGAACTCCTCCCTAAGCCCGTTAC 2 45 0 CCAGAGGTCTTTCCACACTACTGAGTTCTA 3 66 0 CTGGTTCTCTTTCCACACTACTAAGTTCTA 3 133 0 GAGTTTGGCTTTCCACACTACTAAGTTCTA 3 201 0 TTTCAAGCTCCTTCTCAATGGTGTTTCCGT 3 239 1 CTAAGGCGTATTCCTCCATAGGTCTTCACC 9 12 0 TCTAGGGAAGTTCCTCCATGAGCAGAGGTA 9 151 1 ********** MAP Score: 0.165393