AlignACE 3.0 10/20/99
AlignACE2 -i PH/PH_operons017_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944256096
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PH1625	30	335aa long hypothetical mevalonate kinase
#1	PH1626	23	294aa long hypothetical protein
#2	PH1636	155	120aa long hypothetical 50S ribosomal protein L18
#3	PH1637	26	261aa long hypothetical DNA-directed RNA polymerase subunit D

Motif 1
TTTGCTATTTTTTGCGGGGTGAGATCCT    	0	12	1
        ATTGAGCGGGGGTTGCCGAGCCTG	2	2	1
CCTGGTCAAAGGCGCGGGATTTAGGGTCCCGT	2	30	1
GTCCCGTAGGGGTTCCGGGGTTCAAATCCCCG	2	60	1
TTTTGGTGCGGGGGCGGGGATTTGAACCCCGG	2	74	0
          ** ****** **
MAP Score: 9.29008