AlignACE 3.0 10/20/99 AlignACE2 -i PH/PH_operons025_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944256330 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 PH0207 206 428aa long hypothetical protein #1 PH0209 300 131aa long hypothetical protein #2 PH0376 47 283aa long hypothetical cobalamin biosynthesis protein D #3 PH0437 263 367aa long hypothetical protein #4 PH0438 58 339aa long hypothetical adenylosuccinate synthetase #5 PH0439 31 255aa long hypothetical competence-damage protein #6 PH0702 46 364aa long hypothetical translation initiation factor eIF-2 beta chain #7 PH0770 167 154aa long hypothetical protein #8 PH0771 46 391aa long hypothetical aspartate aminotransferase #9 PH1322 55 401aa long hypothetical aspartate aminotransferase #10 PH1371 191 389aa long hypothetical aspartate aminotransferase Motif 1 GTTTACTTTTGTAAAGTTGTAGGTTACAAATG 0 132 0 CCTTGCTTATAAAAATTTGCTACTAATACTTT 1 31 1 CTATGAACTAGTAAATTTAAAAGTATTAGTAG 1 50 0 AAGTACATTGGAAAAGTTGATGAAATTGTAAT 1 155 1 GAGGGCGAAGGAAAGGTTCTAATACTTGCACT 1 197 1 CTACCAGGAGAAAGGGTTGGAGTTCCTTACGA 1 227 1 GTTCCTTACGAAAAAGTTACAGCAGTTGGAGA 1 248 1 AATATTAGGTGAAGAGTTTGAGAAGAGAATTA 3 52 1 GACTCCAATCGAAAAGTATGAGGAGTATTATG 3 88 1 AATAGGGATAGGAAATTTAAAG 5 0 0 AGAAAAGTTTAAGGGAAAGAGGG 6 1 1 TTTGACCGGTATAAATTTAAAAGTTTTTTAAG 7 105 0 GTCAAAATTTAAAAATTTTTAGCAACACAATT 7 131 1 GGATTACATGAAAAATTTATAAAACTTT 8 6 0 ******** ** MAP Score: 10.757 Motif 2 TTTCATGTTTACTTTTGTAAAGTTGTAGGTTACAAATGAT 0 130 0 GAAAATCAGGAAATGCCGAAACATTTATATTTAATTGACG 0 166 1 CATCTTTGATAATTCCATAACCATTTAGTTCACCATTCCC 1 85 0 TACATTGGAAAAGTTGATGAAATTGTAATTGACATCAAGG 1 158 1 CTGGTAGTGCAAGTATTAGAACCTTTCCTTCGCCCTCCTT 1 194 0 TTATATCTCCAACTGCTGTAACTTTTTCGTAAGGAACTCC 1 245 0 TATACCATGTAAATTACATACGGTGTAAATTAT 3 240 1 AAAATAATTTAAGCCAAAAAATATTTAACTAGATAAACTC 7 51 0 TGATATTATGAACTTAAAAAACTTTTAAATTTATACCGGT 7 93 1 ATACCGGTCAAAATTTAAAAATTTTTAGCAACACAATTGG 7 125 1 AAAGTTTTATAAATTTTTCATGTAATCCGGT 8 1 1 TCAAGGATTAAAGTAGGCAAAACTATTTATTAGTGTACTC 9 11 1 CATAGGCTATAAGTTTGTCAAGCTTTATAAAGGTTATCTG 10 40 1 ** * ** **** * MAP Score: 10.6142 Motif 3 AGAAAAGTTTAAGGGAAAGA 6 0 1 CGGTATAAATTTAAAAGTTTTTTAAGTTCA 7 101 0 CCGGATTACATGAAAAATTTATAAAACTTT 8 10 0 CGGTCAAAATTTAAAAATTTTTAGCAACAC 7 129 1 AGCCTTGCTTATAAAAATTTGCTACTAATA 1 29 1 GAGTTCCTTACGAAAAAGTTACAGCAGTTG 1 246 1 TCAATTAAATATAAATGTTTCGGCATTTCC 0 174 0 AGGAGGGCGAAGGAAAGGTTCTAATACTTG 1 195 1 GAATGGTGAACTAAATGGTTATGGAATTAT 1 87 1 CACTACCAGGAGAAAGGGTTGGAGTTCCTT 1 225 1 AAATATTAGGTGAAGAGTTTGAGAAGAGAA 3 51 1 GTTTATCTAGTTAAATATTTTTTGGCTTAA 7 53 1 AGACTCCAATCGAAAAGTATGAGGAGTATT 3 87 1 GAGTACACTAATAAATAGTTTTGCCTACTT 9 21 0 ACTAGTAAATTTAAAAGTATTAGTAGCAAA 1 46 0 GCAAGTACATTGGAAAAGTTGATGAAATTG 1 153 1 TGAAAAATTTATAAAACTTT 8 0 0 ATGGTATATAATATAAGGTTTGCTCTCAAT 3 218 0 GGGACATAGGCTATAAGTTTGTCAAGCTTT 10 36 1 ********** MAP Score: 8.85257 Motif 4 TTCTTGAAATAATTTATGAAGCCCGGGGAGC 0 23 1 TTCATGTTTACTTTTGTAAAGTTGTAGGTTA 0 138 0 GGGGCAAGTACATTGGAAAAGTTGATGAAAT 1 150 1 TTCACCTAATATTTTGAGGAGATCCCTGGTA 3 34 0 TCCTCAAAATATTAGGTGAAGAGTTTGAGAA 3 45 1 TTAGGTGAAGAGTTTGAGAAGAGAATTAAGG 3 56 1 CCAATCGAAAAGTATGAGGAGTATTATGTGA 3 92 1 TATGAGGAGTATTATGTGAAGGCTAGAGAAG 3 104 1 AATGCTTACCCTTTTGACAGGG 4 1 0 TTTACTTACCCTTTGGTAAGGAGT 4 44 1 TTAGCAACACAATTGGTGAGGGGGAGAA 7 149 1 ATAGGCTATAAGTTTGTCAAGCTTTATAAAG 10 41 1 TCCCAGATAACCTTTATAAAGCTTGACAAAC 10 52 0 * ********* MAP Score: 8.66843 Motif 5 ATGATGCCTCAAATGTAAAATATCTAGAAAAGATGCGGGGGTA 0 92 0 GTAACCTACAACTTTACAAAAGTAAACATGAAAATCAGGAAAT 0 137 1 AAATGCCGAAACATTTATATTTAATTGACGAAACATACCA 0 176 1 ATGAACTAGTAAATTTAAAAGTATTAGTAGCAAATTTTTATAA 1 37 0 ACATTGGAAAAGTTGATGAAATTGTAATTGACATCAAGGAGGG 1 159 1 TATGTCGATAAGAAGAGAAATCTCTACCAGGGATCTCCTCAAA 3 10 1 AAGCTTTACGACATGAAGATACCGTACTGGGAAGCACTAAATC 3 154 1 AGAAAAGTTTAAGGGAAAGAGGGTAGAGATCTAAA 6 2 1 GAACTTAAAAAACTTTTAAATTTATACCGGTCAAAATTTAAAA 7 102 1 ATACCGGTCAAAATTTAAAAATTTTTAGCAACACAATTGGTGA 7 125 1 AAAGTTTTATAAATTTTTCATGTAATCCGGTTCTG 8 2 1 AAGTTTGTCAAGCTTTATAAAGGTTATCTGGGAACTATCGAAA 10 50 1 AACTATCGAAAGATTAGGATTGAATTGGAGTGATATCTTTTAC 10 82 1 CGATACGAATATTTTACAAACAAGTAAAAGATATCACTCCAAT 10 105 0 TTCAATCACCACTTGAGAATATGATAATCGAGTTTAAAACCCA 10 157 0 * *** ** ** * * MAP Score: 7.92323 Motif 6 CATGAAAAATTTATAAAACTTT 8 0 0 GAAGGAAAGGTTCTAATACTTGCACTACCAGG 1 203 1 TATTATGAACTTAAAAAACTTTTAAATTTATA 7 96 1 CAGATAACCTTTATAAAGCTTGACAAACTTAT 10 48 0 GAATTCCCTATTCTAAGGCTTGAGTTTATCTA 7 30 1 GGAGCCTTGCTTATAAAAATTTGCTACTAATA 1 27 1 AAAAATTTGCTACTAATACTTTTAAATTTACT 1 41 1 ATTTCCTTTCTTGAAATAATTTATGAAGCCCG 0 16 1 AAGGGGTACCTTAAAATGCTTACCCTTTTGAC 4 14 0 CCGGTCAAAATTTAAAAATTTTTAGCAACACA 7 128 1 CTCCATGCTATTTATATGCTTGGTGGTTAA 2 8 0 ** *** ***** MAP Score: 7.15717 Motif 7 AGCACCGCCGAAGGCGGAGTCAATGAACTTGGGCGGG 0 51 1 ATATAACACCAGGGGCAAGTACATTGGAAAAGTTGAT 1 139 1 TTTCTCCTGGTAGTGCAAGTATTAGAACCTTTCCTTC 1 203 0 TTGCACTACCAGGAGAAAGGGTTGGAGTTCCTTACGA 1 222 1 CCTTACGAAAAAGTTACAGCAGTTGGAGATATAATTT 1 251 1 GATATAATTTTAGTCCAAGCCCCAGAGAGGAA 1 278 1 CTCAAAATATTAGGTGAAGAGTTTGAGAAGAGAATTA 3 47 1 TATTATGTGAAGGCTAGAGAAGCGGAGTGGAAGCGCC 3 113 1 TTACGACATGAAGATACCGTACTGGGAAGCACTAAAT 3 159 1 CCCTGTCAAAAGGGTAAGCATTTTAAGGTACCCCTT 4 9 1 CTCCTTACCAAAGGGTAAGTAAAGGGGTACCTTAAAA 4 30 0 AGAAAAGTTTAAGGGAAAGAGGGTAGAGATC 6 4 1 AGATAAACTCAAGCCTTAGAATAGGGAATTCCGCTGA 7 24 0 *** * ** * *** MAP Score: 6.45435 Motif 8 TCATAGTTAGGGAATGGTGAACTAAATGGT 1 76 1 CCAGGAGAAAGGGTTGGAGTTCCTTACGAA 1 230 1 AAAGTTACAGCAGTTGGAGATATAATTTTA 1 260 1 ATTAGGTGAAGAGTTTGAGAAGAGAATTAA 3 55 1 TCATACTTTTCGATTGGAGTCTCCTTAATT 3 79 0 GAAGGCTAGAGAAGCGGAGTGGAAGCGCCT 3 121 1 TTTAGCAACACAATTGGTGAGGGGGAGAA 7 148 1 GTCCTCGATTGAGGAGGTGAC 10 1 0 GATTAGGATTGAATTGGAGTGATATCTTTT 10 93 1 ATCATATTCTCAAGTGGTGATTGAAG 10 175 1 ********** MAP Score: 4.80883 Motif 9 ATTATTTCAAGAAAGGAAATATAAAT 0 6 0 TAGTTCATAGTTAGGGAATGGTGAACTAAA 1 72 1 CTACCAGGAGAAAGGGTTGGAGTTCCTTAC 1 227 1 ATGTCGATAAGAAGAGAAATCTCTACCAGG 3 11 1 AATATTAGGTGAAGAGTTTGAGAAGAGAAT 3 52 1 AAGAGTTTGAGAAGAGAATTAAGGAGACTC 3 63 1 GACTCCAATCGAAAAGTATGAGGAGTATTA 3 88 1 TCTATTCATTGCAGGGATTTAGTGCTTCCC 3 182 0 TCCCTGCAATGAATAGAATGGCTATTGAGA 3 195 1 GGTATATAATATAAGGTTTGCTCTCAATAG 3 216 0 CCCTGTCAAAAGGGTAAGCATTTTAAGG 4 8 1 ACTCCTTACCAAAGGGTAAGTAAAGGGGTA 4 38 0 CAAAAGAAAAATAGGGATAGGAAATTTAAA 5 11 0 AGAAAAGTTTAAGGGAAAGAGGGTAGAGA 6 9 1 AAGCCTTAGAATAGGGAATTCCGCTGAAGG 7 21 0 ********** MAP Score: 0.756144 Motif 10 TAACCTACAACTTTACAAAAGTAAACATGA 0 138 1 TTTATATTTAATTGACGAAACATACCA 0 189 1 GGTTGGAGTTCCTTACGAAAAAGTTACAGC 1 241 1 GATTTCTCTTCTTATCGACATA 3 2 0 TAAGGAGACTCCAATCGAAAAGTATGAGGA 3 82 1 GCCTAAGAAGCTTTACGACATGAAGATACC 3 147 1 CCCTGTCAAAAGGGTAAGCAT 4 1 1 ACTCCTTACCAAAGGGTAAGTAA 4 45 0 CCCTACAACACCCTTCAGCG 7 0 1 TAAATTTATACCGGTCAAAATTTAAAAATT 7 118 1 CTTTATAAAGCTTGACAAACTTATAGCCTA 10 42 0 TTATCTGGGAACTATCGAAAGATTAGGATT 10 73 1 ********** MAP Score: 0.395924 Motif 11 ATATCTAGAAAAGATGCGGGGGTAATAACCC 0 85 0 ACAAAGGGGCTATTTAAGGAGCCTTGCTTAT 1 10 1 TCAAAGATGTACGGGAAGCTGATATATAACA 1 116 1 TTGCACTACCAGGAGAAAGGGTTGGAGTTCC 1 222 1 TTCACCTAATATTTTGAGGAGATCCCTGGTA 3 34 0 CTCAAAATATTAGGTGAAGAGTTTGAGAAGA 3 47 1 CCAATCGAAAAGTATGAGGAGTATTATGTGA 3 92 1 ATGTGAAGGCTAGAGAAGCGGAGTGGAAGCG 3 117 1 ACCAAAGGGTAAGTAAAGGGGTACCTTAAAA 4 30 0 TACTTACCCTTTGGTAAGGAGT 4 46 1 AGAAAAGTTTAAGGGAAAGAGGGTAGAGATC 6 10 1 AGCAACACAATTGGTGAGGGGGAGAA 7 151 1 TTGTCCTCGATTGAGGAGGTGAC 10 2 0 * ********* MAP Score: 0.119841