AlignACE 3.0 10/20/99
AlignACE2 -i PH/PH_operons051_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944256868
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PH1317	58	138aa long hypothetical glycine cleavage system H protein
#1	PH1995	61	449aa long hypothetical glycine dehydrogenase subunit 1
#2	PH1996	150	225aa long hypothetical protein

Motif 1
GTTAACTCCCCAGCCTTTTTACTGTAAAGATTTT	0	11	1
AATTTAGCAGCAACCTTTAAAATCTTTACAGTAA	0	29	0
      TAATCAACCTTAGGAAAGGTATTTATTA	1	4	1
TTTATCACCGAAACCTTTATTACGCTTTCAATTT	2	10	1
TTTCAATTTAAAGCCTTTTCTGAGGGCCGGTGGC	2	35	1
GATGGGGCGTCGGCCTTCGGAGCCGAAGGTCCCG	2	77	1
          ********  *  *
MAP Score: 4.75627

Motif 2
CTCCCCAGCCTTTTTACTGTAAAGATTTTAA	0	16	1
ACTGTAAAGATTTTAAAGGTTGCTGCTAAAT	0	31	1
TAATCAACCTTAGGAAAGGTATTTATTATAA	1	10	1
GACTAAAAATTTAGTAAGATTATAATAAATA	1	29	0
ATTGAAAGCGTAATAAAGGTTTCGGTGATAA	2	11	0
 TTGTGGAAGTTTTAAAGTTATTGTTGGCGG	2	130	0
          ** ********
MAP Score: 0.894686