AlignACE 3.0 10/20/99
AlignACE2 -i PH/PH_sum_all049_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944236298
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PH0834	116	571aa long hypothetical oxaloacetate decarboxylase alpha chain
#1	PH1727	195	361aa long hypothetical 2-isopropylmalate synthase

Motif 1
TTAACGTTGATCAAGAAAAACCTTTTGTAGACA	0	19	1
TTATATTACCTCACTATAAACGTATCTAAACCA	0	66	0
ATACTAAGATTTTCGAAAAAAATTGTGAACATT	1	42	0
AGAAAATTTTTCTATATAATACTAAGATTTTCG	1	60	0
TCTTAAAAATTTTAGAAAATTTTTCTATATAAT	1	73	0
TATCTTGGATTATCGAATAAAATTTTAAGATCT	1	103	0
TATATAAAATTTTCGAGAAATATCTTGGATTAT	1	123	0
          ****** ***  *
MAP Score: 3.50101

Motif 2
TTCTTGATCAACGTTAAGGTGTTGAT    	0	6	0
CCTTTTGTAGACATTAAGGGACACCTCTGG	0	39	1
AGATACGTTTATAGTGAGGTAATATAAATG	0	72	1
ATGGGGTAAAAGAAGGAGGTTGAAATA   	0	99	1
CCTAGGTTCAAGATGGAGGTGTGGGTGATG	1	156	1
TGGGTGATGAATATTAAGGAAGGAAATA  	1	177	1
          **********
MAP Score: 3.30356