AlignACE 3.0 10/20/99
AlignACE2 -i PH/PH_sum_all075_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944236718
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	PH0462	72	530aa long hypothetical protein
#1	PH0935	40	246aa long hypothetical protein
#2	PH1581	75	139aa long hypothetical protein

Motif 1
CAACCTCCCCATGCCTTAATAACCTGAATAA	0	11	1
TAACCTGAATAAACTTTATTAACATTTTAAC	0	30	1
ATTACTGGAATAGCATTGATA          	1	0	0
  GAAAGGTGAAGCTCTAATAATTACTGGAA	1	21	0
ATGAAAGGGATTACATTTATAATGGTGGTAT	2	13	0
TTTCATTTTTAAACTATAATATATAAATCTT	2	38	1
          **** ******
MAP Score: 4.55573